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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.291.000
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.600
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.585
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.582
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.567
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.562
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.546
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.546
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.539
1pxgPRFQueuine tRNA-ribosyltransferase2.4.2.290.536
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.525
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.524
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.520
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.515
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.512
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.511
3bloQEIQueuine tRNA-ribosyltransferase2.4.2.290.510
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.506
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.504
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.502
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.498
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.493
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.488
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.485
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.482
1r5yDQUQueuine tRNA-ribosyltransferase2.4.2.290.470
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.469
4bfxZVXPantothenate kinase2.7.1.330.465
2g28TDKPyruvate dehydrogenase E1 component1.2.4.10.457
3biz61EWee1-like protein kinase2.7.10.20.454
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.454
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.454
1ygkRRCPyridoxal kinase2.7.1.350.452
3eon341Glutaryl-CoA dehydrogenase/0.452
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.452
1p33MTXPteridine reductase 11.5.1.330.451
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.451
4s1iPLPPyridoxal kinase, putative/0.451
3qpg3QPAspartate aminotransferase2.6.1.10.450
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.450
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.449
1vbiNADMalate/L-lactate dehydrogenase family protein/0.449
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.449
1ivrCBAAspartate aminotransferase, mitochondrial2.6.1.10.448
1nceCB3Thymidylate synthase/0.447
4bfvZVVPantothenate kinase2.7.1.330.447
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.447
1maqPGUAspartate aminotransferase, mitochondrial2.6.1.10.446
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.446
3fhxPXLPyridoxal kinase2.7.1.350.445
5dn1AMZPhosphoribosyl isomerase A5.3.1.160.445
3arvSAUChitinase A/0.443
4kxjP34Nucleoprotein/0.443
5f54TMPSingle-stranded-DNA-specific exonuclease/0.443
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.442
2c94TSF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.440
2ea2F77Methionine aminopeptidase 2/0.440
2in6839Wee1-like protein kinase2.7.10.20.440
3sl2ATPSensor histidine kinase WalK/0.440
4emdC5P4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.440
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.440