scPDB - Distribution of Binding site Similarity values of 1e7q entry / Site 2

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1e7q	NAP	GDP-L-fucose synthase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1e7q	NAP	GDP-L-fucose synthase	/	1.000
1bws	NDP	GDP-L-fucose synthase	/	0.613
1fxs	NAP	GDP-L-fucose synthase	/	0.550
1bsv	NDP	GDP-L-fucose synthase	/	0.495
4b8w	NAP	GDP-L-fucose synthase	1.1.1.271	0.485
4e5y	NDP	GDP-L-fucose synthase	1.1.1.271	0.474
4b8z	NAP	GDP-L-fucose synthase	1.1.1.271	0.460
1kbo	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.449
4bb6	HD1	Corticosteroid 11-beta-dehydrogenase isozyme 1	1.1.1.146	0.447
4yr9	NAD	L-threonine 3-dehydrogenase, mitochondrial	1.1.1.103	0.447
3gwf	FAD	Cyclohexanone monooxygenase	/	0.446
3q43	D66	M1 family aminopeptidase	3.4.11	0.445
4u7w	NDP	MxaA	/	0.443
1h69	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.440
3a1n	NAD	NDP-sugar epimerase	/	0.440