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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1dr4HBIDihydrofolate reductase1.5.1.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1dr4HBIDihydrofolate reductase1.5.1.31.000
1dr3HBIDihydrofolate reductase1.5.1.30.647
2w3aTOPDihydrofolate reductase1.5.1.30.627
3nxtD2EDihydrofolate reductase1.5.1.30.597
3nxvD2FDihydrofolate reductase1.5.1.30.592
4kbn25UDihydrofolate reductase1.5.1.30.588
4kak06UDihydrofolate reductase1.5.1.30.587
4kd79DRDihydrofolate reductase1.5.1.30.586
3k47D09Dihydrofolate reductase1.5.1.30.569
3nxoD2BDihydrofolate reductase1.5.1.30.567
4kfj1R0Dihydrofolate reductase1.5.1.30.561
3oafOAGDihydrofolate reductase1.5.1.30.558
4g95OAGDihydrofolate reductase1.5.1.30.553
1s3wTQTDihydrofolate reductase1.5.1.30.538
3nxrD2DDihydrofolate reductase1.5.1.30.532
4kebFOLDihydrofolate reductase1.5.1.30.532
3nxyD2HDihydrofolate reductase1.5.1.30.530
1bozPRDDihydrofolate reductase1.5.1.30.526
3l3rOAGDihydrofolate reductase1.5.1.30.515
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.511
3h4vDVPPteridine reductase 11.5.1.330.504
1s3uTQDDihydrofolate reductase1.5.1.30.502
3n0hTOPDihydrofolate reductase1.5.1.30.502
1hfrMOTDihydrofolate reductase1.5.1.30.501
1mvsDTMDihydrofolate reductase1.5.1.30.500
1ohjCOPDihydrofolate reductase1.5.1.30.499
4ddrMMVDihydrofolate reductase1.5.1.30.498
1hfpMOTDihydrofolate reductase1.5.1.30.496
1hfqMOTDihydrofolate reductase1.5.1.30.496
3cseN22Uncharacterized protein/0.496
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.492
4zzi1NSNAD-dependent protein deacetylase sirtuin-13.5.10.490
1dg7WRBDihydrofolate reductase1.5.1.30.486
1klkPMDDihydrofolate reductase1.5.1.30.485
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.484
4qjcIXEDihydrofolate reductase1.5.1.30.484
1s3vTQDDihydrofolate reductase1.5.1.30.482
4p68MTXDihydrofolate reductase/0.482
4x5fFOLDihydrofolate reductase1.5.1.30.482
3eej53RUncharacterized protein/0.481
3qlxQLRUncharacterized protein/0.480
1u72MTXDihydrofolate reductase1.5.1.30.479
4ixeIXEDihydrofolate reductase1.5.1.30.479
2dhfDZFDihydrofolate reductase1.5.1.30.478
1pd8CO4Dihydrofolate reductase1.5.1.30.474
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.474
4iaq2GM5-hydroxytryptamine receptor 1B/0.473
3eem53VUncharacterized protein/0.472
5dp2NAPCurF/0.470
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.469
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.469
5k2bZMAAdenosine receptor A2a/0.469
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.468
4h9814QUncharacterized protein/0.468
1ia1TQ3Dihydrofolate reductase1.5.1.30.467
3ihgVAKAklavinone 12-hydroxylase RdmE/0.467
2cd2FOLDihydrofolate reductase1.5.1.30.466
2rkuR78Serine/threonine-protein kinase PLK12.7.11.210.466
4qa0SHHHistone deacetylase 83.5.1.980.466
3qlwN22Dihydrofolate reductase1.5.1.30.465
4cdmFO1Deoxyribodipyrimidine photolyase/0.465
4h9753SDihydrofolate reductase1.5.1.30.465
5iu86DZAdenosine receptor A2a/0.465
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.463
1ygjRMCPyridoxal kinase2.7.1.350.463
2xk85R1Serine/threonine-protein kinase Nek22.7.11.10.463
1ygkRRCPyridoxal kinase2.7.1.350.462
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.462
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.462
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.462
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.462
5fd8A5APutative carboxypeptidase yocD/0.462
1e26GPBDihydrofolate reductase1.5.1.30.461
3gyf51PDihydrofolate reductase1.5.1.30.461
3hv3R49Mitogen-activated protein kinase 14/0.461
3u8hBHPPhospholipase A2, membrane associated/0.461
3qly55VUncharacterized protein/0.460
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.460
4g8zTOPDihydrofolate reductase1.5.1.30.460
4iarERM5-hydroxytryptamine receptor 1B/0.460
4j6dTESCytochrome P450 monooxygenase/0.460
1pd9CO4Dihydrofolate reductase1.5.1.30.459
1pqc444Oxysterols receptor LXR-beta/0.459
3gieACPSensor histidine kinase DesK2.7.13.30.459
2bfmTOPPteridine reductase 11.5.1.330.458
3qi4IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.458
4h9614QDihydrofolate reductase1.5.1.30.458
1dlrMXADihydrofolate reductase1.5.1.30.457
3d80Q22Dihydrofolate reductase1.5.1.30.457
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.457
2fzjDH3Dihydrofolate reductase1.5.1.30.456
3pm1ETHTH-type transcriptional regulator QacR/0.456
4bfwZVWPantothenate kinase2.7.1.330.456
5k2dZMAAdenosine receptor A2a/0.456
3emlZMAAdenosine receptor A2a/0.456
1pkfEPDEpothilone C/D epoxidase1.140.455
1vrqFONSubunit alpha of sarocosine oxidase/0.455
2jc6QPPCalcium/calmodulin-dependent protein kinase type 1D2.7.11.170.455
3d73NBBPheromone-binding protein ASP1/0.455
3gcq1BUMitogen-activated protein kinase 14/0.455
3qlzQLZUncharacterized protein/0.455
1dhfFOLDihydrofolate reductase1.5.1.30.454
3qls55VDihydrofolate reductase1.5.1.30.454
3vg9ZMAAdenosine receptor A2a/0.454
1dg5TOPDihydrofolate reductase1.5.1.30.453
1ry8RUTAldo-keto reductase family 1 member C3/0.453
2uxoTACHTH-type transcriptional regulator TtgR/0.453
3ghwGHWDihydrofolate reductase1.5.1.30.453
3iktNADRedox-sensing transcriptional repressor Rex/0.453
3s7a684Dihydrofolate reductase1.5.1.30.453
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.453
4jlj1NMDeoxycytidine kinase2.7.1.740.453
4zzjCNANAD-dependent protein deacetylase sirtuin-13.5.10.453
1gt5BZQOdorant-binding protein/0.452
1m78CLZDihydrofolate reductase1.5.1.30.452
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.452
1xu9CPSCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.452
1zdwFLVPrenyltransferase/0.452
2io6330Wee1-like protein kinase2.7.10.20.452
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.452
3biz61EWee1-like protein kinase2.7.10.20.452
3qm4PN0Cytochrome P450 2D6/0.452
4b2gV1NUncharacterized protein/0.452
5cc9DDFDihydrofolate reductase1.5.1.30.452
1u71MXADihydrofolate reductase1.5.1.30.451
2ab8MTPAdenosine kinase2.7.1.200.451
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.451
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.451
4dp3MMVBifunctional dihydrofolate reductase-thymidylate synthase/0.451
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.451
1ejbINJ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.450
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.450
1kmsLIHDihydrofolate reductase1.5.1.30.450
2ydoADNAdenosine receptor A2a/0.450
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.450
3sni546cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.450
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.450
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.450
5k2aZMAAdenosine receptor A2a/0.450
2ipjFFAAldo-keto reductase family 1 member C2/0.449
3h3t16HCollagen type IV alpha-3-binding protein/0.449
3hbfMYCFlavonoid 3-O-glucosyltransferase2.4.10.449
3zkyWT4Isopenicillin N synthase1.21.3.10.449
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.449
4iah1DXAlr2278 protein/0.449
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
1pq944BOxysterols receptor LXR-beta/0.448
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
2b8jADNClass B acid phosphatase3.1.3.20.448
2ovyPFJcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
2zb8IMNProstaglandin reductase 21.3.1.480.448
3ituIBMcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.448
5k2cZMAAdenosine receptor A2a/0.448
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.447
3fhxPXLPyridoxal kinase2.7.1.350.447
3gncQQQGlutaryl-CoA dehydrogenase/0.447
4f7iNAD3-isopropylmalate dehydrogenase1.1.1.850.447
4k37SAMAnaerobic sulfatase-maturating enzyme1.8.980.447
4ocvANPAminoglycoside phosphotransferase/0.447
1ry0PG2Aldo-keto reductase family 1 member C3/0.446
1yhjR6CPyridoxal kinase2.7.1.350.446
2obxINI6,7-dimethyl-8-ribityllumazine synthase 22.5.1.780.446
2uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.446
3b9oFMNAlkane monoxygenase/0.446
3br3ETHTH-type transcriptional regulator QacR/0.446
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.446
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.446
4g8cC6LAlpha/beta hydrolase fold protein/0.446
4u163C0Muscarinic acetylcholine receptor M3/0.446
1df7MTXDihydrofolate reductase1.5.1.30.445
1obnASVIsopenicillin N synthase1.21.3.10.445
1rpwDIDHTH-type transcriptional regulator QacR/0.445
2in6839Wee1-like protein kinase2.7.10.20.445
2x7hPFNProstaglandin reductase 310.445
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
3sn7540cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.445
4gi2NAPCrotonyl-CoA carboxylase/reductase/0.445
4h9506UDihydrofolate reductase1.5.1.30.445
4jbtASDCytochrome P450 monooxygenase/0.445
4p9dTMPDeoxycytidylate deaminase/0.445
1p33MTXPteridine reductase 11.5.1.330.444
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.444
2xk3XK3Serine/threonine-protein kinase Nek22.7.11.10.444
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.444
5d7q4I5NAD-dependent protein deacetylase sirtuin-23.5.10.444
5jtbZMAAdenosine receptor A2a/0.444
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.443
2z2w770Wee1-like protein kinase2.7.10.20.443
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.443
3pz23PZGeranylgeranyl transferase type-2 subunit beta2.5.1.600.443
4bfvZVVPantothenate kinase2.7.1.330.443
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
1p0pBCHCholinesterase3.1.1.80.442
1toiHCIAspartate aminotransferase2.6.1.10.442
2h447CAcGMP-specific 3',5'-cyclic phosphodiesterase/0.442
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.442
2y6fM9FIsopenicillin N synthase1.21.3.10.442
3arvSAUChitinase A/0.442
3nj0PYVAbscisic acid receptor PYL2/0.442
3nu03TUDihydrofolate reductase1.5.1.30.442
4bfyZVYPantothenate kinase2.7.1.330.442
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
2ejzSAHDiphthine synthase/0.441
2ivpATPtRNA N6-adenosine threonylcarbamoyltransferase/0.441
2j3jHC4NADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.441
2vcmM11Isopenicillin N synthase1.21.3.10.441
2z7gEH9Adenosine deaminase3.5.4.40.441
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.441
3q9bB3NAcetylpolyamine amidohydrolase/0.441
4bb3KKAIsopenicillin N synthase1.21.3.10.441
4bwaN0BPyrrolysine--tRNA ligase/0.441
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.441
4z9rNADOmega-3 polyunsaturated fatty acid synthase subunit PfaD/0.441
1synF89Thymidylate synthase/0.440
1upw444Oxysterols receptor LXR-beta/0.440
1xddAAYIntegrin alpha-L/0.440
2b82ADNClass B acid phosphatase3.1.3.20.440
2fs4PZ1Renin3.4.23.150.440
2gpjFADSiderophore-interacting protein/0.440
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3eek53SUncharacterized protein/0.440
3g58988cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
3iakEV1cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
3qlrQLRDihydrofolate reductase1.5.1.30.440
4ajfF03cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.440
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.440
4xbfFADLysine-specific histone demethylase 1A10.440
5d1bTSNHistone deacetylase 83.5.1.980.440