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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1dgbNDPCatalase1.11.1.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1dgbNDPCatalase1.11.1.61.000
1dggNDPCatalase1.11.1.60.694
3nwlNDPCatalase1.11.1.60.645
8catNDPCatalase1.11.1.60.639
4blcNDPCatalase1.11.1.60.612
1dgfNDPCatalase1.11.1.60.610
1dghNDPCatalase1.11.1.60.606
7catNDPCatalase1.11.1.60.596
4e37NDPCatalase1.11.1.60.522
2cahNDPCatalase1.11.1.60.493