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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1dajMOTDihydrofolate reductase1.5.1.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1dajMOTDihydrofolate reductase1.5.1.31.000
1cd2FOLDihydrofolate reductase1.5.1.30.653
1vj3TABDihydrofolate reductase1.5.1.30.621
3eel53TUncharacterized protein/0.613
2cd2FOLDihydrofolate reductase1.5.1.30.600
3cd2MTXDihydrofolate reductase1.5.1.30.593
2fziDH3Dihydrofolate reductase1.5.1.30.592
3cseN22Uncharacterized protein/0.590
3qly55VUncharacterized protein/0.589
3eej53RUncharacterized protein/0.588
3td8D2RDihydrofolate reductase1.5.1.30.588
4ixfIXFDihydrofolate reductase1.5.1.30.588
3qlxQLRUncharacterized protein/0.581
3eem53VUncharacterized protein/0.579
4ixgIXGDihydrofolate reductase1.5.1.30.576
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.575
2fzhDH1Dihydrofolate reductase1.5.1.30.574
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.569
3eek53SUncharacterized protein/0.568
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.568
4cd2FOLDihydrofolate reductase1.5.1.30.566
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.561
4h9814QUncharacterized protein/0.561
1e26GPBDihydrofolate reductase1.5.1.30.560
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.558
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.554
3qlzQLZUncharacterized protein/0.553
3qlwN22Dihydrofolate reductase1.5.1.30.549
1klkPMDDihydrofolate reductase1.5.1.30.545
1hfqMOTDihydrofolate reductase1.5.1.30.543
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.543
4h9614QDihydrofolate reductase1.5.1.30.543
3qls55VDihydrofolate reductase1.5.1.30.541
1ly3COGDihydrofolate reductase1.5.1.30.539
1rx3MTXDihydrofolate reductase1.5.1.30.537
1m7aMQUDihydrofolate reductase1.5.1.30.536
2zzaFOLDihydrofolate reductase/0.536
4h9506UDihydrofolate reductase1.5.1.30.536
3dfrMTXDihydrofolate reductase1.5.1.30.531
4h9753SDihydrofolate reductase1.5.1.30.531
1aoeGW3Dihydrofolate reductase1.5.1.30.526
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.526
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.525
3qlrQLRDihydrofolate reductase1.5.1.30.523
4g8zTOPDihydrofolate reductase1.5.1.30.523
3frdDHFDihydrofolate reductase1.5.1.30.518
1dg7WRBDihydrofolate reductase1.5.1.30.516
3ia4MTXDihydrofolate reductase/0.516
3clbTMQBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.510
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.507
4ixeIXEDihydrofolate reductase1.5.1.30.506
1dg5TOPDihydrofolate reductase1.5.1.30.505
4bb3KKAIsopenicillin N synthase1.21.3.10.505
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.504
1hfpMOTDihydrofolate reductase1.5.1.30.501
3drcMTXDihydrofolate reductase1.5.1.30.500
3ghvGHCDihydrofolate reductase1.5.1.30.500
3tq9MTXDihydrofolate reductase/0.500
3datMTXDihydrofolate reductase/0.499
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.499
4m6l21VDihydrofolate reductase1.5.1.30.499
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.497
3ghwGHWDihydrofolate reductase1.5.1.30.494
2w3vTOPDihydrofolate reductase/0.493
1hb3SCVIsopenicillin N synthase1.21.3.10.492
1kmsLIHDihydrofolate reductase1.5.1.30.492
3srrQ20Dihydrofolate reductase1.5.1.30.491
4kbn25UDihydrofolate reductase1.5.1.30.491
1qzfFOLBifunctional dihydrofolate reductase-thymidylate synthase/0.490
1dhfFOLDihydrofolate reductase1.5.1.30.489
1df7MTXDihydrofolate reductase1.5.1.30.488
3eigMTXDihydrofolate reductase1.5.1.30.488
3freTOPDihydrofolate reductase1.5.1.30.488
1draMTXDihydrofolate reductase1.5.1.30.487
1drbMTXDihydrofolate reductase1.5.1.30.487
2vbpVB1Isopenicillin N synthase1.21.3.10.486
3jw5TOPDihydrofolate reductase/0.485
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.485
1ohjCOPDihydrofolate reductase1.5.1.30.483
1hb1OCVIsopenicillin N synthase1.21.3.10.482
1tdrMTXDihydrofolate reductase1.5.1.30.482
3jwm5WBDihydrofolate reductase/0.482
4kfj1R0Dihydrofolate reductase1.5.1.30.482
2drcMTXDihydrofolate reductase1.5.1.30.481
3vt7VDXVitamin D3 receptor/0.481
4nx6FOLDihydrofolate reductase1.5.1.30.481
3dauMTXDihydrofolate reductase1.5.1.30.480
3fy9XCFDihydrofolate reductase1.5.1.30.480
4kjjFOLDihydrofolate reductase1.5.1.30.480
3m08RARDihydrofolate reductase1.5.1.30.479
4elb34SDihydrofolate reductase/0.479
1rb3MTXDihydrofolate reductase1.5.1.30.478
2jb4A14Isopenicillin N synthase1.21.3.10.478
3adaNADSubunit alpha of sarocosine oxidase/0.478
1pd9CO4Dihydrofolate reductase1.5.1.30.477
2wo7ASVIsopenicillin N synthase1.21.3.10.477
4fgg0U5Dihydrofolate reductase1.5.1.30.477
4ia7BIVVitamin D3 receptor A/0.477
3d80Q22Dihydrofolate reductase1.5.1.30.476
4dp3MMVBifunctional dihydrofolate reductase-thymidylate synthase/0.476
1u72MTXDihydrofolate reductase1.5.1.30.475
2fzjDH3Dihydrofolate reductase1.5.1.30.475
3ntz3TZDihydrofolate reductase1.5.1.30.475
3tqbFOLDihydrofolate reductase/0.475
4nx7FOLDihydrofolate reductase1.5.1.30.475
4xe606UDihydrofolate reductase1.5.1.30.475
1oc1ASVIsopenicillin N synthase1.21.3.10.474
2dhfDZFDihydrofolate reductase1.5.1.30.474
3a1l2CCCytochrome P450/0.474
3zkyWT4Isopenicillin N synthase1.21.3.10.474
3frfXCFDihydrofolate reductase1.5.1.30.473
3fywXCFDihydrofolate reductase1.5.1.30.473
4ele31IDihydrofolate reductase/0.473
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.473
1m78CLZDihydrofolate reductase1.5.1.30.472
1ohkCOPDihydrofolate reductase1.5.1.30.472
2ban357Gag-Pol polyprotein2.7.7.490.472
4kak06UDihydrofolate reductase1.5.1.30.472
4x5gFOLDihydrofolate reductase1.5.1.30.472
5k2bZMAAdenosine receptor A2a/0.472
3ix9MTXDihydrofolate reductase1.5.1.30.471
4m2xTMQDihydrofolate reductase1.5.1.30.471
1db1VDXVitamin D3 receptor/0.470
1diuBDMDihydrofolate reductase1.5.1.30.470
2vn0TDZCytochrome P450 2C8/0.470
3k47D09Dihydrofolate reductase1.5.1.30.470
3ue4DB8Tyrosine-protein kinase ABL12.7.10.20.470
4fgh0U6Dihydrofolate reductase1.5.1.30.470
5jtbZMAAdenosine receptor A2a/0.470
2vcmM11Isopenicillin N synthase1.21.3.10.469
2z97CAMCamphor 5-monooxygenase1.14.15.10.469
3bgxMEFThymidylate synthase/0.469
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.469
3och2MXDihydrofolate reductase1.5.1.30.469
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.469
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.469
5iu86DZAdenosine receptor A2a/0.469
1s3yTQTDihydrofolate reductase1.5.1.30.468
3sa27DRDihydrofolate reductase/0.468
1hfrMOTDihydrofolate reductase1.5.1.30.466
3l3rOAGDihydrofolate reductase1.5.1.30.466
4kd79DRDihydrofolate reductase1.5.1.30.466
1disBDMDihydrofolate reductase1.5.1.30.465
1hvyD16Thymidylate synthase2.1.1.450.465
1mvsDTMDihydrofolate reductase1.5.1.30.465
1s3vTQDDihydrofolate reductase1.5.1.30.465
2g2hP16Tyrosine-protein kinase ABL12.7.10.20.465
3zoiM2WIsopenicillin N synthase1.21.3.10.465
4e37NDPCatalase1.11.1.60.465
7dfrFOLDihydrofolate reductase1.5.1.30.465
1errRALEstrogen receptor/0.464
1qiqACCIsopenicillin N synthase1.21.3.10.464
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.464
2ij7TPFMycocyclosin synthase1.14.21.90.464
3fraI2HDihydrofolate reductase1.5.1.30.464
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.464
3v94WYQPhosphodiesterase/0.464
3vt9YI4Vitamin D3 receptor/0.464
1ddsMTXDihydrofolate reductase1.5.1.30.463
1ly4COQDihydrofolate reductase1.5.1.30.463
2b0m201Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.463
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.463
2y60M8FIsopenicillin N synthase1.21.3.10.463
1fwmCB3Thymidylate synthase/0.462
1pd8CO4Dihydrofolate reductase1.5.1.30.462
1w06W05Isopenicillin N synthase1.21.3.10.462
3gi2GHWDihydrofolate reductase1.5.1.30.462
3h1jSMACytochrome b/0.462
3w5p4OAVitamin D3 receptor/0.462
4kebFOLDihydrofolate reductase1.5.1.30.462
3rg9WRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.461
3sh25DRDihydrofolate reductase1.5.1.30.461
4j6cSTRCytochrome P450 monooxygenase/0.461
3emlZMAAdenosine receptor A2a/0.461
1txiTX5Vitamin D3 receptor/0.460
2w3mFOLDihydrofolate reductase1.5.1.30.460
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.460
4elf35IDihydrofolate reductase/0.460
1bk0ACVIsopenicillin N synthase1.21.3.10.459
1uzwCDHIsopenicillin N synthase1.21.3.10.459
2iviACWIsopenicillin N synthase1.21.3.10.459
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.459
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.459
3srsM23Dihydrofolate reductase1.5.1.30.459
4dfrMTXDihydrofolate reductase1.5.1.30.459
5k2cZMAAdenosine receptor A2a/0.459
3ezpB3NHistone deacetylase 83.5.1.980.458
3sa16DRDihydrofolate reductase/0.458
4elg52JDihydrofolate reductase/0.458
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.458
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.458
4j6dTESCytochrome P450 monooxygenase/0.458
1crbRTLRetinol-binding protein 1/0.457
1fduESTEstradiol 17-beta-dehydrogenase 11.1.1.620.457
2hamC33Vitamin D3 receptor/0.457
2y6fM9FIsopenicillin N synthase1.21.3.10.457
3kpzZNEVitamin D3 receptor/0.457
5k2dZMAAdenosine receptor A2a/0.457
2p15EZTEstrogen receptor/0.456
2qk8MTXDihydrofolate reductase/0.456
2w3wVG9Dihydrofolate reductase/0.456
3bqdDAYGlucocorticoid receptor/0.456
3fl8RARDihydrofolate reductase/0.456
4ddrMMVDihydrofolate reductase1.5.1.30.456
5uviZMAAdenosine receptor A2a/0.456
1s3uTQDDihydrofolate reductase1.5.1.30.455
2ydwWSHBromodomain-containing protein 2/0.455
3fy8XCFDihydrofolate reductase1.5.1.30.455
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.455
3sruQ26Dihydrofolate reductase1.5.1.30.455
4p66MTXDihydrofolate reductase/0.455
4x5fFOLDihydrofolate reductase1.5.1.30.455
1fm4DXCMajor pollen allergen Bet v 1-L/0.454
2xvw9NRSerum albumin/0.454
3fyvXCFDihydrofolate reductase1.5.1.30.454
3srqQ19Dihydrofolate reductase1.5.1.30.454
4at4T6EBDNF/NT-3 growth factors receptor2.7.10.10.454
4elb34RDihydrofolate reductase/0.454
1ie9VDXVitamin D3 receptor/0.453
1uuoBRFDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.453
1x8lOXRRetinol dehydratase/0.453
2hc4VDXVitamin D3 receptor A/0.453
2zb45OPProstaglandin reductase 21.3.1.480.453
3gyf51PDihydrofolate reductase1.5.1.30.453
3iaeD7KBenzaldehyde lyase/0.453
3srwQ27Dihydrofolate reductase1.5.1.30.453
4xwtU5PRibonuclease J/0.453
1jolFFODihydrofolate reductase1.5.1.30.452
1tvrTB9Gag-Pol polyprotein2.7.7.490.452
1zg32HIIsoflavone 4'-O-methyltransferase/0.452
2o4rVD5Vitamin D3 receptor/0.452
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.452
3v49PK0Androgen receptor/0.452
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.452
1dr3HBIDihydrofolate reductase1.5.1.30.451
1mvtDTMDihydrofolate reductase1.5.1.30.451
1w7kADPDihydrofolate synthase/folylpolyglutamate synthase6.3.2.120.451
2ofv242Tyrosine-protein kinase Lck2.7.10.20.451
2y37A54Nitric oxide synthase, inducible1.14.13.390.451
2z3uCRRCytochrome P450/0.451
4fhh0U3Vitamin D3 receptor A/0.451
4ia3BIVVitamin D3 receptor A/0.451
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.451
4kb81QNCasein kinase I isoform delta2.7.11.10.451
2po7CHDFerrochelatase, mitochondrial4.99.1.10.450
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.450
5h8tRTLRetinol-binding protein 1/0.450
3rfmCFFAdenosine receptor A2a/0.450
1kmvLIIDihydrofolate reductase1.5.1.30.449
1s6qTPBGag-Pol polyprotein2.7.7.490.449
1upw444Oxysterols receptor LXR-beta/0.449
2vbdV10Isopenicillin N synthase1.21.3.10.449
2zb8IMNProstaglandin reductase 21.3.1.480.449
5k2aZMAAdenosine receptor A2a/0.449
1rg7MTXDihydrofolate reductase1.5.1.30.448
1zeoC01Peroxisome proliferator-activated receptor gamma/0.448
2ovhAS0Progesterone receptor/0.448
2xvv9DNSerum albumin/0.448
3l6jZ90Alr2278 protein/0.448
3oapREARetinoic acid receptor RXR-alpha/0.448
3zk5Z18Cytochrome P450 monooxygenase PikC/0.448
4bqpVMYEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
4l9kEHFSerum albumin/0.448
4ubsDIFPentalenic acid synthase1.14.15.110.448
1pp9SMACytochrome b/0.447
3inxJZCHeat shock protein HSP 90-alpha/0.447
3mnrSD1Heat shock protein HSP 90-alpha/0.447
3w0iO11Vitamin D3 receptor/0.447
4eiyZMAAdenosine receptor A2a/0.447
4ia1BIVVitamin D3 receptor A/0.447
1s19MC9Vitamin D3 receptor/0.446
3dg8RJ6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.446
3nx4NAPPutative oxidoreductase/0.446
3pqbVGPPutative oxidoreductase/0.446
4a9mP9MBromodomain-containing protein 2/0.446
4rujVDXVitamin D3 receptor A/0.446
5g53NECAdenosine receptor A2a/0.446
2bbqPFGThymidylate synthase/0.445
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
2hasC3OVitamin D3 receptor/0.445
2hb8MVDVitamin D3 receptor/0.445
2ph5NADHomospermidine synthase/0.445
2wi72KLHeat shock protein HSP 90-alpha/0.445
3dl9V2HVitamin D 25-hydroxylase/0.445
3hz137DHeat shock protein HSP 90-alpha/0.445
3inwJZBHeat shock protein HSP 90-alpha/0.445
3nd1SAHPrecorrin-6A synthase (Deacetylating)/0.445
3oafOAGDihydrofolate reductase1.5.1.30.445
3ql3FOLDihydrofolate reductase1.5.1.30.445
3vt65YIVitamin D3 receptor/0.445
4iteTEYVitamin D3 receptor/0.445
4l8u9AZSerum albumin/0.445
4qa0SHHHistone deacetylase 83.5.1.980.445
1dyjDDFDihydrofolate reductase1.5.1.30.444
1iyzNDPProbable quinone oxidoreductase/0.444
1re7FOLDihydrofolate reductase1.5.1.30.444
2hw2RFPRifampin ADP-ribosyl transferase/0.444
3nu03TUDihydrofolate reductase1.5.1.30.444
3s7a684Dihydrofolate reductase1.5.1.30.444
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.444
3vt5YI2Vitamin D3 receptor/0.444
3w0yDS4Vitamin D3 receptor/0.444
4hni16WCasein kinase I isoform epsilon2.7.11.10.444
4nc3ERM5-hydroxytryptamine receptor 2B/0.444
1dyrTOPDihydrofolate reductase1.5.1.30.443
1pkfEPDEpothilone C/D epoxidase1.140.443
1sqvUHDCytochrome b/0.443
1wsvTHHAminomethyltransferase, mitochondrial/0.443
2wufKEM4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase3.7.1.170.443
2wugHPK4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase3.7.1.170.443
3jwcEKBDihydrofolate reductase/0.443
3nxrD2DDihydrofolate reductase1.5.1.30.443
3w0aDS5Vitamin D3 receptor/0.443
4gevCB3Thymidylate synthase/0.443
4iarERM5-hydroxytryptamine receptor 1B/0.443
5hi6MTXDihydrofolate reductase/0.443
1kzjCB3Thymidylate synthase/0.442
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
1rt4UC1Gag-Pol polyprotein2.7.7.490.442
2qblCAMCamphor 5-monooxygenase1.14.15.10.442
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.442
3hub469Mitogen-activated protein kinase 14/0.442
3p6nDSOCamphor 5-monooxygenase1.14.15.10.442
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.442
3vtdTKDVitamin D3 receptor/0.442
4mfb29TGag-Pol polyprotein2.7.7.490.442
1d3hA26Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.441
1fm7DFVChalcone--flavonone isomerase 15.5.1.60.441
1obnASVIsopenicillin N synthase1.21.3.10.441
2qo4CHDFatty acid-binding protein 10-A, liver basic/0.441
3bfb9ODPheromone-binding protein ASP1/0.441
3ctj320Hepatocyte growth factor receptor2.7.10.10.441
3dmjGWEPol protein/0.441
3k4551PDihydrofolate reductase1.5.1.30.441
3p6oETGCamphor 5-monooxygenase1.14.15.10.441
3t2zFADSulfide-quinone reductase/0.441
3tmz06XCytochrome P450 2B41.14.14.10.441
3w0c6DSVitamin D3 receptor/0.441
4iui1GQEstrogen receptor/0.441
4j6bPLOCytochrome P450 monooxygenase/0.441
4nb6444Nuclear receptor ROR-gamma/0.441
5iubCLRAdenosine receptor A2a/0.441
1qjfACSIsopenicillin N synthase1.21.3.10.440
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.440
2yekEAMBromodomain-containing protein 2/0.440
3a60STURibosomal protein S6 kinase beta-12.7.11.10.440
3bfa9ODOdorant binding protein ASP1/0.440
3ijdC2FMethylenetetrahydrofolate reductase/0.440
3lu8IQXSerum albumin/0.440
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.440
3oct1N1Tyrosine-protein kinase BTK2.7.10.20.440
3wd9QPCcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.440
4acg6LQGlycogen synthase kinase-3 beta2.7.11.260.440
4ia2BIVVitamin D3 receptor A/0.440