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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1d4cFADFumarate reductase flavoprotein subunit1.3.5.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1d4cFADFumarate reductase flavoprotein subunit1.3.5.41.000
1d4dFADFumarate reductase flavoprotein subunit1.3.5.40.552
4kx6FADFumarate reductase flavoprotein subunit1.3.5.40.513
1qo8FADFumarate reductase flavoprotein subunit/0.512
1kf6FADFumarate reductase flavoprotein subunit1.3.5.40.504
1knrFADL-aspartate oxidase1.4.3.160.481
3ctyFADProbable thioredoxin reductase/0.440