scPDB - Distribution of Binding site Similarity values of 1cq8 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1cq8	PY6	Aspartate aminotransferase	2.6.1.1

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1cq8	PY6	Aspartate aminotransferase	2.6.1.1	1.000
1cq7	PY5	Aspartate aminotransferase	2.6.1.1	0.741
1maq	PGU	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.649
3qpg	3QP	Aspartate aminotransferase	2.6.1.1	0.626
1toi	HCI	Aspartate aminotransferase	2.6.1.1	0.624
1ivr	CBA	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.601
1asc	NPL	Aspartate aminotransferase	2.6.1.1	0.573
1map	KET	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.573
4dbc	3QP	Aspartate aminotransferase	2.6.1.1	0.568
1akb	PPD	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.564
1cq6	PY4	Aspartate aminotransferase	2.6.1.1	0.551
1akc	PPE	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.548
1toj	HCI	Aspartate aminotransferase	2.6.1.1	0.533
1ahg	TYR_PLP	Aspartate aminotransferase	2.6.1.1	0.471
1arg	PPD	Aspartate aminotransferase	2.6.1.1	0.456
1n5v	NOM	ActVA 6 protein	/	0.453
1x28	PGU	Aspartate aminotransferase	2.6.1.1	0.453
2zsd	COA	Pantothenate kinase	2.7.1.33	0.450
2gev	COK	Pantothenate kinase	2.7.1.33	0.446
2zs8	ADP	Pantothenate kinase	2.7.1.33	0.444
1i59	ADP	Chemotaxis protein CheA	2.7.13.3	0.441