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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1comPREChorismate mutase AroH5.4.99.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1comPREChorismate mutase AroH5.4.99.51.000
3zp4TSAChorismate mutase AroH5.4.99.50.556
2chtTSAChorismate mutase AroH5.4.99.50.539
1wlvCOAPhenylacetic acid degradation protein PaaI/0.470
3cemAVDGlycogen phosphorylase, liver form2.4.1.10.456
1e90MYCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.450
1psdNADD-3-phosphoglycerate dehydrogenase1.1.1.950.448
2bxoOPBSerum albumin/0.445
2atiIHUGlycogen phosphorylase, liver form2.4.1.10.444
3ml8ML8Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
1x2hLPALipoate-protein ligase A6.3.1.200.441