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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1cf3FADGlucose oxidase1.1.3.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1cf3FADGlucose oxidase1.1.3.41.000
1galFADGlucose oxidase1.1.3.40.596
2ignFADPyranose 2-oxidase/0.469
4qi7FADCellobiose dehydrogenase/0.466
4yntFDAGlucose oxidase, putative/0.464
4z26FADPutative GMC-type oxidoreductase R13510.462
4qi5FADCellobiose dehydrogenase/0.451
4qi4FADCellobiose dehydrogenase/0.447
3bg7FADPyranose 2-oxidase/0.442