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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1cc2FADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1cc2FADCholesterol oxidase1.1.3.61.000
4u2sFDACholesterol oxidase1.1.3.60.763
4u2lSFDCholesterol oxidase1.1.3.60.694
1mxtFAECholesterol oxidase1.1.3.60.693
1n4uFAECholesterol oxidase1.1.3.60.674
1b4vFADCholesterol oxidase1.1.3.60.667
1cboFADCholesterol oxidase1.1.3.60.657
1n4vFADCholesterol oxidase1.1.3.60.642
1ijhFADCholesterol oxidase1.1.3.60.617
4xwrFADCholesterol oxidase1.1.3.60.603
4xxgFADCholesterol oxidase1.1.3.60.582
4rekFADCholesterol oxidase1.1.3.60.562
3cnjFADCholesterol oxidase1.1.3.60.559
3gyjFADCholesterol oxidase1.1.3.60.559
1b8sFADCholesterol oxidase1.1.3.60.558
3coxFADCholesterol oxidase1.1.3.60.558
3gyiFADCholesterol oxidase1.1.3.60.548
4qi5FADCellobiose dehydrogenase/0.532
4qi4FADCellobiose dehydrogenase/0.509
4qi7FADCellobiose dehydrogenase/0.494
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.447
1cf3FADGlucose oxidase1.1.3.40.441