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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1c7fFMNFlavodoxin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1c7fFMNFlavodoxin/1.000
3f6rFMNFlavodoxin/0.553
5tgzFMNCannabinoid receptor 1/0.532
1ja0FMNNADPH--cytochrome P450 reductase/0.529
1bu5RBFFlavodoxin/0.517
1akrFMNFlavodoxin/0.512
4y7cFMNNADPH--cytochrome P450 reductase/0.510
1j9zFMNNADPH--cytochrome P450 reductase/0.509
3hr4FMNNitric oxide synthase, inducible1.14.13.390.507
3f90FMNFlavodoxin/0.501
3ojxFMNNADPH--cytochrome P450 reductase/0.499
2bn4FMNNADPH--cytochrome P450 reductase/0.494
5fx2FMNFlavodoxin/0.494
1j9gFMNFlavodoxin/0.486
1azlFMNFlavodoxin/0.480
1akwFMNFlavodoxin/0.476
3f6sFMNFlavodoxin/0.476
1xyyFMNFlavodoxin/0.468
2bf4FMNNADPH--cytochrome P450 reductase/0.467
1fx1FMNFlavodoxin/0.466
5xraFMNCannabinoid receptor 1/0.460
3ojwFMNNADPH--cytochrome P450 reductase/0.457
1akuFMNFlavodoxin/0.456
4fx2FMNFlavodoxin/0.454
1ofvFMNFlavodoxin/0.452
1wsbFMNFlavodoxin/0.445
3udq09EBeta-secretase 13.4.23.460.445
2v5uFMNFlavodoxin/0.443