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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1c1bGCAGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1c1bGCAGag-Pol polyprotein2.7.7.491.000
1c1c612Gag-Pol polyprotein2.7.7.490.625
1rt1MKCGag-Pol polyprotein2.7.7.490.613
3dmjGWEPol protein/0.605
3ffi3OBGag-Pol polyprotein2.7.7.490.601
3is9AC7Gag-Pol polyprotein2.7.7.490.587
1tl1H18Gag-Pol polyprotein2.7.7.490.576
2ze2T27Gag-Pol polyprotein2.7.7.490.576
3dleGFAGag-Pol polyprotein2.7.7.490.576
3lanKBTGag-Pol polyprotein2.7.7.490.576
1rt5UC2Gag-Pol polyprotein2.7.7.490.569
4i2pG73Gag-Pol polyprotein2.7.7.490.565
3qlhT27Gag-Pol polyprotein2.7.7.490.562
3m8qDJZGag-Pol polyprotein2.7.7.490.560
1rt4UC1Gag-Pol polyprotein2.7.7.490.553
1tl3H20Gag-Pol polyprotein2.7.7.490.553
1jlaTNKGag-Pol polyprotein2.7.7.490.550
4i7fNVEGag-Pol polyprotein2.7.7.490.549
4g1qT27Gag-Pol polyprotein2.7.7.490.546
4id5T27Gag-Pol polyprotein2.7.7.490.546
3t1a5MAGag-Pol polyprotein2.7.7.490.544
4ifvT27Gag-Pol polyprotein2.7.7.490.540
2zd1T27Gag-Pol polyprotein2.7.7.490.538
4rw6494Gag-Pol polyprotein2.7.7.490.538
1tktH12Gag-Pol polyprotein2.7.7.490.533
3lamKRPGag-Pol polyprotein2.7.7.490.530
3i0rRT3Gag-Pol polyprotein2.7.7.490.529
1rt2TNKGag-Pol polyprotein2.7.7.490.528
3bgrT27Gag-Pol polyprotein2.7.7.490.526
1s1vTNKGag-Pol polyprotein2.7.7.490.525
4rw4494Gag-Pol polyprotein2.7.7.490.522
1revTB9Gag-Pol polyprotein2.7.7.490.521
3c6uM22Gag-Pol polyprotein2.7.7.490.521
4h4o506Gag-Pol polyprotein2.7.7.490.520
3dlgGWEGag-Pol polyprotein2.7.7.490.518
3dyaPZLGag-Pol polyprotein2.7.7.490.516
3irxUDRGag-Pol polyprotein2.7.7.490.516
4mfb29TGag-Pol polyprotein2.7.7.490.515
1tvrTB9Gag-Pol polyprotein2.7.7.490.514
3lakKR1Gag-Pol polyprotein2.7.7.490.513
1rtiHEFGag-Pol polyprotein2.7.7.490.512
3lalKRVGag-Pol polyprotein2.7.7.490.512
3dolGWIPol protein/0.511
3t195MAGag-Pol polyprotein2.7.7.490.511
2be2R22Gag-Pol polyprotein2.7.7.490.510
4h4m494Gag-Pol polyprotein2.7.7.490.509
1ep4S11Gag-Pol polyprotein2.7.7.490.507
4i2q1BTGag-Pol polyprotein2.7.7.490.505
1tkzH16Gag-Pol polyprotein2.7.7.490.502
3dokGWJPol protein/0.502
4kfbT27Gag-Pol polyprotein2.7.7.490.502
1s9eADBGag-Pol polyprotein2.7.7.490.501
3di6PDZGag-Pol polyprotein2.7.7.490.500
5cyqT27Gag-Pol polyprotein2.7.7.490.492
1ikyMSDGag-Pol polyprotein2.7.7.490.489
3c6tM14Gag-Pol polyprotein2.7.7.490.489
4ko0JLJGag-Pol polyprotein2.7.7.490.489
1hnvTBOGag-Pol polyprotein2.7.7.490.488
3i0sRT7Gag-Pol polyprotein2.7.7.490.488
3mec65BGag-Pol polyprotein2.7.7.490.488
1jlcFTCGag-Pol polyprotein2.7.7.490.487
1klmSPPGag-Pol polyprotein2.7.7.490.486
4lsl1YQGag-Pol polyprotein2.7.7.490.485
1ikwEFZGag-Pol polyprotein2.7.7.490.484
2rkiTT1Gag-Pol polyprotein2.7.7.490.484
1s6qTPBGag-Pol polyprotein2.7.7.490.483
2b5j3ACGag-Pol polyprotein2.7.7.490.483
3med65BGag-Pol polyprotein2.7.7.490.483
1hniAAAGag-Pol polyprotein2.7.7.490.481
1rt7UC4Gag-Pol polyprotein2.7.7.490.481
3drpR8EGag-Pol polyprotein2.7.7.490.481
3m8p65BGag-Pol polyprotein2.7.7.490.481
4kko1REGag-Pol polyprotein2.7.7.490.481
1vruAAPGag-Pol polyprotein2.7.7.490.480
1hquHBYGag-Pol polyprotein2.7.7.490.479
1hpzAAPGag-Pol polyprotein2.7.7.490.478
2ban357Gag-Pol polyprotein2.7.7.490.478
3tamM06Gag-Pol polyprotein2.7.7.490.478
4ig3T27Gag-Pol polyprotein2.7.7.490.478
3nbpJGZGag-Pol polyprotein2.7.7.490.475
3drrR8EGag-Pol polyprotein2.7.7.490.474
2hnzPC0Gag-Pol polyprotein2.7.7.490.473
1s1wUC1Gag-Pol polyprotein2.7.7.490.470
2ynfWHUGag-Pol polyprotein2.7.7.490.470
3e01PZ2Gag-Pol polyprotein2.7.7.490.470
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.470
3meeT27Gag-Pol polyprotein2.7.7.490.467
1eetBFUGag-Pol polyprotein2.7.7.490.466
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.465
2wonZZEGag-Pol polyprotein2.7.7.490.462
2ynhEURGag-Pol polyprotein2.7.7.490.459
2vg7NNIGag-Pol polyprotein2.7.7.490.457
1s1tUC1Gag-Pol polyprotein2.7.7.490.451
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.451
1ek2CDUBifunctional epoxide hydrolase 2/0.449
2opsHBQGag-Pol polyprotein2.7.7.490.449
1fkoEFZGag-Pol polyprotein2.7.7.490.446
3megT27Gag-Pol polyprotein2.7.7.490.446
1ikxPNUGag-Pol polyprotein2.7.7.490.441
2bxnIDBSerum albumin/0.441
1jlgUC1Gag-Pol polyprotein2.7.7.490.440
3m9vTYDFAD-dependent oxidoreductase/0.440
4kcfAKMFAD-dependent oxidoreductase/0.440