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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1bu5RBFFlavodoxin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1bu5RBFFlavodoxin/1.000
3f6rFMNFlavodoxin/0.600
1c7fFMNFlavodoxin/0.539
1xyyFMNFlavodoxin/0.537
1akwFMNFlavodoxin/0.533
1akrFMNFlavodoxin/0.528
5fx2FMNFlavodoxin/0.523
4fx2FMNFlavodoxin/0.517
5tgzFMNCannabinoid receptor 1/0.497
1azlFMNFlavodoxin/0.493
1fx1FMNFlavodoxin/0.490
1j9gFMNFlavodoxin/0.489
5xraFMNCannabinoid receptor 1/0.482
3f6sFMNFlavodoxin/0.481
2fx2FMNFlavodoxin/0.480
4y7cFMNNADPH--cytochrome P450 reductase/0.476
3n3aFMNProtein NrdI/0.468
1ykgFMNSulfite reductase [NADPH] flavoprotein alpha-component/0.464
3f90FMNFlavodoxin/0.464
3ojxFMNNADPH--cytochrome P450 reductase/0.464
1j9zFMNNADPH--cytochrome P450 reductase/0.462
1akuFMNFlavodoxin/0.461
4b4w9L9Bifunctional protein FolD/0.457
1xyvFMNFlavodoxin/0.450
3kapFMNFlavodoxin/0.450
3ny8JRZBeta-2 adrenergic receptor/0.450
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.448
3naxMP73-phosphoinositide-dependent protein kinase 12.7.11.10.442
4b4vL34Bifunctional protein FolD/0.442
3kmtSAHHistone H3K27 methylase/0.441
1o6qR17Squalene--hopene cyclase4.2.1.1290.440