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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1bidUMPThymidylate synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1bidUMPThymidylate synthase/1.000
1aobDDUThymidylate synthase/0.639
1bduDURThymidylate synthase/0.636
2vetUMPThymidylate synthase/0.628
2g8aUMPThymidylate synthase/0.542
1jmgUMPThymidylate synthase/0.540
2g86UMPThymidylate synthase/0.537
2g89UMPThymidylate synthase/0.528
1jmfUMPThymidylate synthase/0.514
1njbUMPThymidylate synthase/0.512
1njdUMPThymidylate synthase/0.508
1njeDCMThymidylate synthase/0.508
1tsyUMPThymidylate synthase/0.508
1jmiUMPThymidylate synthase/0.496
1tsvUMPThymidylate synthase/0.494
3bgxTMPThymidylate synthase/0.494
1bp6UMPThymidylate synthase/0.491
1lcbTMPThymidylate synthase/0.479
2tdmUMPThymidylate synthase/0.478
3qj7UMPThymidylate synthase ThyA/0.468
1jmhUMPThymidylate synthase/0.467
1tsxUMPThymidylate synthase/0.467
1bpjUMPThymidylate synthase/0.463
1vzaUMPThymidylate synthase/0.463
1vzbUMPThymidylate synthase/0.461
1njaDCMThymidylate synthase/0.456