sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1b16 | NAQ | Alcohol dehydrogenase | 1.1.1.1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1b16 | NAQ | Alcohol dehydrogenase | 1.1.1.1 | 1.000 | |
| 1b15 | NAE | Alcohol dehydrogenase | 1.1.1.1 | 0.803 | |
| 3rj5 | NAD | Alcohol dehydrogenase | 1.1.1.1 | 0.649 | |
| 3rj9 | NAD | Alcohol dehydrogenase | 1.1.1.1 | 0.621 | |
| 1mg5 | NAI | Alcohol dehydrogenase | 1.1.1.1 | 0.593 | |
| 1sby | NAD | Alcohol dehydrogenase | 1.1.1.1 | 0.580 | |
| 1b14 | NAD | Alcohol dehydrogenase | 1.1.1.1 | 0.555 | |
| 3a4v | NAD | NDP-sugar epimerase | / | 0.549 | |
| 5jla | NAD | Putative short-chain dehydrogenase/reductase | / | 0.546 | |
| 3wds | NAD | NADH-dependent quinuclidinone reductase | / | 0.544 | |
| 4dc1 | NDP | Putative ketoacyl reductase | 1.3.1 | 0.542 | |
| 4z3d | NDP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.540 | |
| 1cyd | NDP | Carbonyl reductase [NADPH] 2 | 1.1.1.184 | 0.537 | |
| 1w4z | NAP | Putative ketoacyl reductase | 1.3.1 | 0.529 | |
| 4rf2 | NAP | NADPH dependent R-specific alcohol dehydrogenase | / | 0.525 | |
| 5lc1 | NAD | L-threonine 3-dehydrogenase | / | 0.525 | |
| 1geg | NAD | Diacetyl reductase [(S)-acetoin forming] | 1.1.1.304 | 0.520 | |
| 1x7h | NDP | Putative ketoacyl reductase | 1.3.1 | 0.519 | |
| 2dkn | NAI | 3-alpha-hydroxysteroid dehydrogenase | / | 0.519 | |
| 1wnt | NAP | L-xylulose reductase | 1.1.1.10 | 0.518 | |
| 1ae1 | NAP | Tropinone reductase 1 | / | 0.516 | |
| 4gh5 | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.516 | |
| 3qrw | NDP | Putative ketoacyl reductase | 1.3.1 | 0.514 | |
| 3uxy | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.514 | |
| 3ndr | NAD | Pyridoxal 4-dehydrogenase | 1.1.1.107 | 0.513 | |
| 4i5e | NAP | Alclohol dehydrogenase/short-chain dehydrogenase | / | 0.510 | |
| 1e3w | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.508 | |
| 2wsb | NAD | Galactitol dehydrogenase | / | 0.508 | |
| 1iy8 | NAD | Levodione reductase | / | 0.507 | |
| 1zem | NAD | Xylitol dehydrogenase | / | 0.507 | |
| 3ak4 | NAD | NADH-dependent quinuclidinone reductase | / | 0.507 | |
| 4fw8 | NAI | 3-oxoacyl-(Acyl-carrier-protein) reductase | / | 0.506 | |
| 3bhi | NAP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.505 | |
| 1pr9 | NAP | L-xylulose reductase | 1.1.1.10 | 0.504 | |
| 1sny | NAP | LD36273p | / | 0.504 | |
| 4nbu | NAI | 3-oxoacyl-(Acyl-carrier-protein) reductase | / | 0.504 | |
| 1nfr | NAD | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.503 | |
| 3a28 | NAD | L-2,3-butanediol dehydrogenase | 1.1.1.76 | 0.503 | |
| 4qec | NAP | ElxO | / | 0.502 | |
| 2wdz | NAD | Galactitol dehydrogenase | / | 0.499 | |
| 2p5u | NAD | UDP-glucose 4-epimerase | / | 0.496 | |
| 3tox | NAP | Putative oxidoreductase | / | 0.494 | |
| 1e6w | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.493 | |
| 1ipe | NDP | Tropinone reductase 2 | 1.1.1.236 | 0.493 | |
| 2ewm | NAD | (S)-1-Phenylethanol dehydrogenase | 1.1.1.311 | 0.493 | |
| 3gy0 | NAP | NAD(P)-dependent oxidoreductase | / | 0.493 | |
| 3o4r | NAP | Dehydrogenase/reductase SDR family member 4 | 1.1.1.184 | 0.493 | |
| 3sju | NDP | Keto reductase | / | 0.493 | |
| 4imp | NDP | Polyketide synthase extender modules 3-4 | / | 0.493 | |
| 1edo | NAP | 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic | 1.1.1.100 | 0.491 | |
| 1vl8 | NAP | Oxidoreductase, short chain dehydrogenase/reductase family | / | 0.491 | |
| 2yut | NAP | Putative short-chain oxidoreductase | / | 0.491 | |
| 3a1n | NAD | NDP-sugar epimerase | / | 0.491 | |
| 3nug | NAD | Pyridoxal 4-dehydrogenase | 1.1.1.107 | 0.491 | |
| 3p19 | NDP | Putative blue fluorescent protein | / | 0.491 | |
| 4nbt | NAD | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.490 | |
| 1x7g | NAP | Putative ketoacyl reductase | 1.3.1 | 0.488 | |
| 2zat | NAP | Dehydrogenase/reductase SDR family member 4 | 1.1.1.184 | 0.488 | |
| 3iah | NAP | Putative oxoacyl-(Acyl carrier protein) reductase | / | 0.488 | |
| 2gdz | NAD | 15-hydroxyprostaglandin dehydrogenase [NAD(+)] | 1.1.1.141 | 0.487 | |
| 1xkq | NDP | Uncharacterized protein | / | 0.486 | |
| 3w8d | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.486 | |
| 4pvd | NDP | NADPH-dependent methylglyoxal reductase GRE2 | / | 0.486 | |
| 2bd0 | NAP | Sepiapterin reductase | / | 0.485 | |
| 2yy7 | NAD | L-threonine dehydrogenase | / | 0.484 | |
| 4yr9 | NAD | L-threonine 3-dehydrogenase, mitochondrial | 1.1.1.103 | 0.483 | |
| 1nff | NAD | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.482 | |
| 3f1k | NAP | Uncharacterized oxidoreductase YciK | 1 | 0.482 | |
| 4cql | NAD | Estradiol 17-beta-dehydrogenase 8 | 1.1.1.62 | 0.482 | |
| 2q2q | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.479 | |
| 1n5d | NDP | Carbonyl reductase [NADPH] 1 | / | 0.477 | |
| 3w8f | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.477 | |
| 2c54 | NAD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.476 | |
| 2ztm | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.476 | |
| 5jsf | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.476 | |
| 1xg5 | NAP | Dehydrogenase/reductase SDR family member 11 | / | 0.475 | |
| 3lqf | NAD | Galactitol dehydrogenase | / | 0.475 | |
| 5idw | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.474 | |
| 1e3s | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.473 | |
| 4c7k | NAP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.473 | |
| 3g49 | NAP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.472 | |
| 3l77 | NJP | Short-chain alcohol dehydrogenase | / | 0.472 | |
| 3aw9 | NAD | NAD-dependent epimerase/dehydratase | / | 0.471 | |
| 4fc7 | NAP | Peroxisomal 2,4-dienoyl-CoA reductase | 1.3.1.34 | 0.471 | |
| 4fj2 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.471 | |
| 4yai | NAI | C alpha-dehydrogenase | / | 0.471 | |
| 3ajr | NAD | NDP-sugar epimerase | / | 0.470 | |
| 1g0n | NDP | Tetrahydroxynaphthalene reductase | 1.1.1.252 | 0.469 | |
| 4ej0 | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.469 | |
| 4yag | NAI | C alpha-dehydrogenase | / | 0.469 | |
| 2jah | NDP | Clavaldehyde dehydrogenase | / | 0.468 | |
| 5js6 | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.468 | |
| 3wmx | NAD | NAD dependent epimerase/dehydratase | / | 0.467 | |
| 4fj0 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.467 | |
| 2b37 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.466 | |
| 2q2v | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.466 | |
| 4lis | NAD | UDP-glucose 4-epimerase (Eurofung) | / | 0.466 | |
| 4qed | NAP | ElxO | / | 0.466 | |
| 2x86 | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.465 | |
| 3qwf | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.465 | |
| 3d3w | NAP | L-xylulose reductase | 1.1.1.10 | 0.464 | |
| 3sx2 | NAD | Uncharacterized protein | / | 0.464 | |
| 1z7e | ATP | Bifunctional polymyxin resistance protein ArnA | / | 0.463 | |
| 2hsd | NAD | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.463 | |
| 4bms | NAP | Alclohol dehydrogenase/short-chain dehydrogenase | / | 0.463 | |
| 4nbw | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.463 | |
| 2gn8 | NAP | UDP-N-acetylglucosamine 4,6-dehydratase (inverting) | 4.2.1.115 | 0.462 | |
| 2ekp | NAD | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.460 | |
| 3tn7 | NJP | Short-chain alcohol dehydrogenase | / | 0.460 | |
| 4fn4 | NAD | Short chain dehydrogenase | / | 0.460 | |
| 4j7u | NAP | Sepiapterin reductase | 1.1.1.153 | 0.460 | |
| 2c59 | NAD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.458 | |
| 2q4b | NAP | Uncharacterized protein At5g02240 | / | 0.458 | |
| 4wlu | NAD | Malate dehydrogenase, mitochondrial | 1.1.1.37 | 0.458 | |
| 3ggo | NAI | Prephenate dehydrogenase | / | 0.456 | |
| 3w8e | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.456 | |
| 4wlv | NAD | Malate dehydrogenase, mitochondrial | 1.1.1.37 | 0.456 | |
| 1rwb | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.455 | |
| 4iqg | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.455 | |
| 1gee | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.454 | |
| 3ai2 | NDP | NADPH-sorbose reductase | / | 0.454 | |
| 4is3 | NAD | 3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 | 1.17.98.1 | 0.454 | |
| 3a9w | NAD | NDP-sugar epimerase | / | 0.453 | |
| 4ajp | 88N | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.453 | |
| 2dte | NAI | Glucose 1-dehydrogenase related protein | / | 0.452 | |
| 4bmv | NAP | Short-chain dehydrogenase | / | 0.452 | |
| 4o0l | NDP | NADPH-dependent 3-quinuclidinone reductase | / | 0.452 | |
| 1kvr | NAD | UDP-glucose 4-epimerase | 5.1.3.2 | 0.451 | |
| 2wyv | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.450 | |
| 3vdq | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.449 | |
| 4hwk | NAP | Sepiapterin reductase | 1.1.1.153 | 0.449 | |
| 2d1y | NAD | Oxidoreductase, short-chain dehydrogenase/reductase family | / | 0.448 | |
| 2x6t | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.448 | |
| 3rku | NAP | NADP-dependent 3-hydroxy acid dehydrogenase | / | 0.448 | |
| 3uce | NDP | Dehydrogenase | / | 0.447 | |
| 4bv9 | NDP | Ketimine reductase mu-crystallin | 1.5.1.25 | 0.447 | |
| 1ie3 | NAD | Malate dehydrogenase | / | 0.446 | |
| 1ybm | NAP | Uncharacterized protein At5g02240 | / | 0.446 | |
| 1t2d | NAD | L-lactate dehydrogenase | 1.1.1.27 | 0.445 | |
| 3pgx | NAD | Uncharacterized NAD-dependent oxidoreductase MAP_4146 | / | 0.445 | |
| 4eso | NAP | Putative oxidoreductase | / | 0.445 | |
| 4fj1 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.445 | |
| 1i3l | NAD | UDP-glucose 4-epimerase | / | 0.444 | |
| 1n7h | NDP | GDP-mannose 4,6 dehydratase 2 | 4.2.1.47 | 0.444 | |
| 4m87 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.443 | |
| 1eq2 | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.442 | |
| 1agn | NAD | Alcohol dehydrogenase class 4 mu/sigma chain | 1.1.1.1 | 0.441 | |
| 1i2b | NAD | UDP-sulfoquinovose synthase, chloroplastic | 3.13.1.1 | 0.441 | |
| 2hjr | APR | Malate dehydrogenase, adjacent gene encodes predicted lactate dehydrogenase | / | 0.441 | |
| 4j7x | NAP | Sepiapterin reductase | 1.1.1.153 | 0.441 | |
| 1gco | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.440 | |
| 1xq6 | NAP | Uncharacterized protein At5g02240 | / | 0.440 | |
| 2aqk | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.440 |