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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1aq2ATPPhosphoenolpyruvate carboxykinase (ATP)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1aq2ATPPhosphoenolpyruvate carboxykinase (ATP)/1.000
1aylATPPhosphoenolpyruvate carboxykinase (ATP)/0.681
1os1ATPPhosphoenolpyruvate carboxykinase (ATP)/0.640
2py7ATPPhosphoenolpyruvate carboxykinase (ATP)/0.581
2olrATPPhosphoenolpyruvate carboxykinase (ATP)/0.546
2olqATPPhosphoenolpyruvate carboxykinase (ATP)/0.532
1ytmATPPhosphoenolpyruvate carboxykinase (ATP)/0.521
2pc9ATPPhosphoenolpyruvate carboxykinase (ATP)/0.486
4bebATPType I restriction enzyme EcoR124II R protein3.1.21.30.453
1adfTADAlcohol dehydrogenase E chain1.1.1.10.440
2qajAP5Adenylate kinase/0.440