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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ahgTYR_PLPAspartate aminotransferase2.6.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ahgTYR_PLPAspartate aminotransferase2.6.1.11.000
1x28PGUAspartate aminotransferase2.6.1.10.592
1akbPPDAspartate aminotransferase, mitochondrial2.6.1.10.558
1maqPGUAspartate aminotransferase, mitochondrial2.6.1.10.548
3qpg3QPAspartate aminotransferase2.6.1.10.524
4dbc3QPAspartate aminotransferase2.6.1.10.523
4ge90L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.519
1argPPDAspartate aminotransferase2.6.1.10.517
4rkdKETAminotransferase/0.516
1akcPPEAspartate aminotransferase, mitochondrial2.6.1.10.514
1mapKETAspartate aminotransferase, mitochondrial2.6.1.10.514
1cq7PY5Aspartate aminotransferase2.6.1.10.513
1cq6PY4Aspartate aminotransferase2.6.1.10.510
1arhPPDAspartate aminotransferase2.6.1.10.507
1akaPLPAspartate aminotransferase, mitochondrial2.6.1.10.502
1cq8PY6Aspartate aminotransferase2.6.1.10.500
1oxoIK2Aspartate aminotransferase, mitochondrial2.6.1.10.499
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.491
1ascNPLAspartate aminotransferase2.6.1.10.486
2ay5IOPAromatic-amino-acid aminotransferase2.6.1.570.485
4w5kPLPAspartate aminotransferase, mitochondrial/0.478
3b1dPLSBetaC-S lyase/0.477
4wljIK2Kynurenine--oxoglutarate transaminase 12.6.1.70.469
3fr5I4AFatty acid-binding protein, adipocyte/0.457
1ivrCBAAspartate aminotransferase, mitochondrial2.6.1.10.455
1toiHCIAspartate aminotransferase2.6.1.10.455
4lzwTHMUridine phosphorylase/0.452
4emyPLPAminotransferase class I and II/0.447
2ay2CXPAromatic-amino-acid aminotransferase2.6.1.570.446
1kbo340NAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.445
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.442