sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1ah3 | TOL | Aldose reductase | 1.1.1.21 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1ah3 | TOL | Aldose reductase | 1.1.1.21 | 1.000 | |
| 2pdl | TOL | Aldose reductase | 1.1.1.21 | 0.658 | |
| 2fzd | TOL | Aldose reductase | 1.1.1.21 | 0.651 | |
| 2fzb | TOL | Aldose reductase | 1.1.1.21 | 0.611 | |
| 2pdh | 47D | Aldose reductase | 1.1.1.21 | 0.565 | |
| 1zua | TOL | Aldo-keto reductase family 1 member B10 | 1.1.1 | 0.563 | |
| 4wev | SUZ | Aldo-keto reductase family 1 member B10 | 1.1.1 | 0.539 | |
| 2pdf | ZST | Aldose reductase | 1.1.1.21 | 0.524 | |
| 5liu | 388 | Aldo-keto reductase family 1 member B10 | 1.1.1 | 0.514 | |
| 1ry0 | PG2 | Aldo-keto reductase family 1 member C3 | / | 0.497 | |
| 2f38 | 15M | Aldo-keto reductase family 1 member C3 | / | 0.497 | |
| 1s36 | CEI | Obelin | / | 0.496 | |
| 1ry8 | RUT | Aldo-keto reductase family 1 member C3 | / | 0.494 | |
| 1z4i | UMP | 5'(3')-deoxyribonucleotidase, mitochondrial | 3.1.3 | 0.493 | |
| 1e1f | PSG | 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic | 3.2.1.182 | 0.491 | |
| 1uhj | CZB | Aequorin-2 | / | 0.486 | |
| 4mqt | 2CU | Muscarinic acetylcholine receptor M2 | / | 0.484 | |
| 2fzj | DH3 | Dihydrofolate reductase | 1.5.1.3 | 0.482 | |
| 3g4g | D71 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.482 | |
| 3wav | DWV | Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 | 3.1.4.39 | 0.482 | |
| 1ej3 | CZH | Aequorin-2 | / | 0.481 | |
| 4dbu | BT9 | Aldo-keto reductase family 1 member C3 | / | 0.480 | |
| 1el4 | CTZ | Obelin | / | 0.477 | |
| 4fam | 0SZ | Aldo-keto reductase family 1 member C3 | / | 0.477 | |
| 1t40 | ID5 | Aldose reductase | 1.1.1.21 | 0.476 | |
| 1tbb | ROL | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.476 | |
| 1uhh | CZP | Aequorin-2 | / | 0.475 | |
| 1qv0 | CZH | Obelin | / | 0.474 | |
| 3a1l | 2CC | Cytochrome P450 | / | 0.474 | |
| 4mvh | 2F5 | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.474 | |
| 2dux | ZST | Aldose reductase | 1.1.1.21 | 0.473 | |
| 3u57 | DH8 | Raucaffricine-O-beta-D-glucosidase | 3.2.1.125 | 0.473 | |
| 2vcm | M11 | Isopenicillin N synthase | 1.21.3.1 | 0.472 | |
| 3g4i | D71 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.472 | |
| 4eil | FOL | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.472 | |
| 1zkl | IBM | High affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A | 3.1.4.53 | 0.471 | |
| 4bbh | YBN | Glycylpeptide N-tetradecanoyltransferase | / | 0.470 | |
| 1y60 | H4M | 5,6,7,8-tetrahydromethanopterin hydro-lyase | 4.2.1.147 | 0.469 | |
| 2bjs | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.469 | |
| 2fm5 | M99 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.469 | |
| 2ouu | 35G | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.469 | |
| 2yne | YNE | Glycylpeptide N-tetradecanoyltransferase | / | 0.469 | |
| 4ky4 | 04J | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.469 | |
| 4nqg | CZH | Mitrocomin | / | 0.469 | |
| 1jf0 | CZH | Obelin | / | 0.466 | |
| 2vbp | VB1 | Isopenicillin N synthase | 1.21.3.1 | 0.466 | |
| 1blz | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.465 | |
| 2i16 | LDT | Aldose reductase | 1.1.1.21 | 0.465 | |
| 1qiq | ACC | Isopenicillin N synthase | 1.21.3.1 | 0.464 | |
| 3ug8 | IMN | Aldo-keto reductase family 1 member C3 | / | 0.464 | |
| 3uzx | AOX | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.464 | |
| 1qv1 | CZH | Obelin | / | 0.463 | |
| 4ey6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.463 | |
| 1ohk | COP | Dihydrofolate reductase | 1.5.1.3 | 0.462 | |
| 1xf0 | ASD | Aldo-keto reductase family 1 member C3 | / | 0.462 | |
| 2i17 | LDT | Aldose reductase | 1.1.1.21 | 0.462 | |
| 3htj | ET | EbrA repressor | / | 0.462 | |
| 4b12 | C23 | Glycylpeptide N-tetradecanoyltransferase | / | 0.462 | |
| 1bk0 | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.461 | |
| 2xuf | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.461 | |
| 3g45 | 988 | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.461 | |
| 3mb9 | ZST | Aldose reductase | 1.1.1.21 | 0.461 | |
| 3ugr | IMN | Aldo-keto reductase family 1 member C3 | / | 0.461 | |
| 1kms | LIH | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 1q9m | ROL | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.460 | |
| 3m0i | ZST | Aldose reductase | 1.1.1.21 | 0.460 | |
| 3r6i | JMS | Aldo-keto reductase family 1 member C3 | / | 0.460 | |
| 3sl8 | JN7 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.460 | |
| 3u5y | SCG | Raucaffricine-O-beta-D-glucosidase | 3.2.1.125 | 0.460 | |
| 4n1f | CZH | Obelin | / | 0.460 | |
| 1yc2 | NAD | NAD-dependent protein deacylase 2 | / | 0.459 | |
| 3sl6 | JN8 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.459 | |
| 1jf2 | CZH | Obelin | / | 0.458 | |
| 2duz | ZST | Aldose reductase | 1.1.1.21 | 0.458 | |
| 2fs4 | PZ1 | Renin | 3.4.23.15 | 0.458 | |
| 2g26 | 3LG | Renin | 3.4.23.15 | 0.458 | |
| 2nvc | ITA | Aldose reductase | 1.1.1.21 | 0.458 | |
| 2pzn | 393 | Aldose reductase | 1.1.1.21 | 0.457 | |
| 4mrx | CZH | Obelin | / | 0.457 | |
| 1v08 | NTZ | 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic | 3.2.1.182 | 0.456 | |
| 1y2k | 7DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.456 | |
| 2hvn | ZST | Aldose reductase | 1.1.1.21 | 0.456 | |
| 3hxe | BD8 | Geranylgeranyl transferase type-2 subunit beta | 2.5.1.60 | 0.456 | |
| 3t0k | DCQ | Sulfide-quinone reductase | / | 0.456 | |
| 4gca | 2X9 | Aldose reductase | 1.1.1.21 | 0.456 | |
| 1kyv | RBF | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.455 | |
| 2dv0 | ZST | Aldose reductase | 1.1.1.21 | 0.455 | |
| 3w5e | NVW | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.455 | |
| 4a16 | H34 | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 1odn | APV | Isopenicillin N synthase | 1.21.3.1 | 0.454 | |
| 1s7g | NAD | NAD-dependent protein deacylase 2 | / | 0.454 | |
| 1z89 | 62P | Aldose reductase | 1.1.1.21 | 0.454 | |
| 4b11 | 7I1 | Glycylpeptide N-tetradecanoyltransferase | / | 0.454 | |
| 3x04 | GNP | Phosphatidylinositol 5-phosphate 4-kinase type-2 beta | 2.7.1.149 | 0.453 | |
| 4gtt | 7TQ | Geranylgeranyl transferase type-2 subunit beta | 2.5.1.60 | 0.453 | |
| 1sl9 | CZH | Obelin | / | 0.452 | |
| 2hv5 | ZST | Aldose reductase | 1.1.1.21 | 0.452 | |
| 4bfu | ZVU | Pantothenate kinase | 2.7.1.33 | 0.452 | |
| 1qti | GNT | Acetylcholinesterase | 3.1.1.7 | 0.451 | |
| 1z3n | 3NA | Aldose reductase | 1.1.1.21 | 0.451 | |
| 2xui | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.451 | |
| 3bur | TES | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.451 | |
| 3wqm | B29 | Diterpene synthase | 3.1.7.8 | 0.451 | |
| 2pdx | ZST | Aldose reductase | 1.1.1.21 | 0.450 | |
| 2vrj | NCW | Beta-glucosidase A | 3.2.1.21 | 0.450 | |
| 3hxb | BD5 | Geranylgeranyl transferase type-2 subunit beta | 2.5.1.60 | 0.450 | |
| 4f1l | 0RY | Poly [ADP-ribose] polymerase 14 | 2.4.2.30 | 0.450 | |
| 4tvj | 09L | Poly [ADP-ribose] polymerase 2 | 2.4.2.30 | 0.450 | |
| 1xom | CIO | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.449 | |
| 3c72 | CX1 | Geranylgeranyl transferase type-2 subunit beta | 2.5.1.60 | 0.449 | |
| 4h7c | 10H | Aldo-keto reductase family 1 member C3 | / | 0.449 | |
| 5cc9 | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.449 | |
| 4u15 | 0HK | Muscarinic acetylcholine receptor M3 | / | 0.449 | |
| 1iei | ZES | Aldose reductase | 1.1.1.21 | 0.448 | |
| 1pq6 | 965 | Oxysterols receptor LXR-beta | / | 0.448 | |
| 1xoq | ROF | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.448 | |
| 1y2d | 4DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.448 | |
| 2pdj | 393 | Aldose reductase | 1.1.1.21 | 0.448 | |
| 3jsx | CC2 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.448 | |
| 3len | ZST | Aldose reductase | 1.1.1.21 | 0.448 | |
| 4keb | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.448 | |
| 4llk | MEW | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.448 | |
| 2iki | 388 | Aldose reductase | 1.1.1.21 | 0.447 | |
| 3v94 | WYQ | Phosphodiesterase | / | 0.447 | |
| 3zku | HCV | Isopenicillin N synthase | 1.21.3.1 | 0.447 | |
| 4e0u | 0MV | Cyclic dipeptide N-prenyltransferase | / | 0.447 | |
| 1zq5 | E04 | Aldo-keto reductase family 1 member C3 | / | 0.446 | |
| 3g6z | A7T | Renin | 3.4.23.15 | 0.446 | |
| 3itu | IBM | cGMP-dependent 3',5'-cyclic phosphodiesterase | 3.1.4.17 | 0.446 | |
| 3mc5 | 393 | Aldose reductase | 1.1.1.21 | 0.446 | |
| 4c1i | EH9 | cGMP-dependent 3',5'-cyclic phosphodiesterase | 3.1.4.17 | 0.446 | |
| 4dbw | 511 | Aldo-keto reductase family 1 member C3 | / | 0.446 | |
| 1hb3 | SCV | Isopenicillin N synthase | 1.21.3.1 | 0.445 | |
| 1oc1 | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.445 | |
| 2fap | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.445 | |
| 2fap | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.445 | |
| 2vqq | TFG | Histone deacetylase 4 | 3.5.1.98 | 0.445 | |
| 3d3p | 20A | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.445 | |
| 3hxc | BD6 | Geranylgeranyl transferase type-2 subunit beta | 2.5.1.60 | 0.445 | |
| 3n0h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.445 | |
| 3p5s | AVU | CD38 molecule | / | 0.445 | |
| 3qpp | PFW | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.445 | |
| 1ro9 | 8BR | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.444 | |
| 1y2c | 3DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.444 | |
| 2fm0 | M98 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.444 | |
| 2xuh | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 3hbf | MYC | Flavonoid 3-O-glucosyltransferase | 2.4.1 | 0.444 | |
| 3hyw | DCQ | Sulfide-quinone reductase | / | 0.444 | |
| 4fa3 | 0SL | Aldo-keto reductase family 1 member C3 | / | 0.444 | |
| 1eko | I84 | Aldose reductase | 1.1.1.21 | 0.443 | |
| 1obn | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.443 | |
| 1oyn | ROL | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.443 | |
| 2b04 | CHO | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.443 | |
| 2get | COK | Pantothenate kinase | 2.7.1.33 | 0.443 | |
| 3g5e | Q74 | Aldose reductase | 1.1.1.21 | 0.443 | |
| 4boe | CLR | Japanin | / | 0.443 | |
| 4pnm | NU1 | Tankyrase-2 | 2.4.2.30 | 0.443 | |
| 1pqc | 444 | Oxysterols receptor LXR-beta | / | 0.442 | |
| 2vz0 | D64 | Pteridine reductase | / | 0.442 | |
| 3cmf | PDN | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.442 | |
| 4b13 | X25 | Glycylpeptide N-tetradecanoyltransferase | / | 0.442 | |
| 4b14 | 4XB | Glycylpeptide N-tetradecanoyltransferase | / | 0.442 | |
| 4jpg | 1OX | Pyruvate kinase PKM | 2.7.1.40 | 0.442 | |
| 4kxj | P34 | Nucleoprotein | / | 0.442 | |
| 1pwl | BFI | Aldose reductase | 1.1.1.21 | 0.441 | |
| 2q15 | 3MR | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 3g70 | A5T | Renin | 3.4.23.15 | 0.441 | |
| 3g72 | A6T | Renin | 3.4.23.15 | 0.441 | |
| 3pz3 | PZ3 | Geranylgeranyl transferase type-2 subunit beta | 2.5.1.60 | 0.441 | |
| 3t8x | T8X | T-cell surface glycoprotein CD1b | / | 0.441 | |
| 4fcb | 0T7 | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.441 | |
| 4yu1 | 53N | Aldose reductase | 1.1.1.21 | 0.441 | |
| 3qak | UKA | Adenosine receptor A2a | / | 0.441 | |
| 1hfr | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 1nsg | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.440 | |
| 1nsg | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.440 | |
| 1t41 | ID5 | Aldose reductase | 1.1.1.21 | 0.440 | |
| 2c1z | KMP | Anthocyanidin 3-O-glucosyltransferase 2 | 2.4.1.115 | 0.440 | |
| 2g7y | MO9 | Cathepsin S | 3.4.22.27 | 0.440 | |
| 3lbo | LDT | Aldose reductase | 1.1.1.21 | 0.440 | |
| 3ld5 | LDT | Aldose reductase | 1.1.1.21 | 0.440 | |
| 3nn6 | HNK | 6-hydroxy-L-nicotine oxidase | / | 0.440 | |
| 4arb | C57 | Acetylcholinesterase | 3.1.1.7 | 0.440 |