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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1a42BZUCarbonic anhydrase 24.2.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1a42BZUCarbonic anhydrase 24.2.1.11.000
1bnnAL1Carbonic anhydrase 24.2.1.10.810
1bn1AL5Carbonic anhydrase 24.2.1.10.767
2h15B19Carbonic anhydrase 24.2.1.10.758
1bn4AL9Carbonic anhydrase 24.2.1.10.753
3dazMZMCarbonic anhydrase 24.2.1.10.749
1bnwTPDCarbonic anhydrase 24.2.1.10.740
1bntAL2Carbonic anhydrase 24.2.1.10.737
1i91INQCarbonic anhydrase 24.2.1.10.736
3k2fNKXCarbonic anhydrase 24.2.1.10.736
3d9zD9ZCarbonic anhydrase 24.2.1.10.732
1i9nIOACarbonic anhydrase 24.2.1.10.721
3eft3BSCarbonic anhydrase 24.2.1.10.715
1kwrSG2Carbonic anhydrase 24.2.1.10.700
1cilETSCarbonic anhydrase 24.2.1.10.698
1bnqAL4Carbonic anhydrase 24.2.1.10.691
1i90INMCarbonic anhydrase 24.2.1.10.683
1g1dFSBCarbonic anhydrase 24.2.1.10.678
3qykIE2Carbonic anhydrase 24.2.1.10.671
4kap1QVCarbonic anhydrase 24.2.1.10.671
3po6DT9Carbonic anhydrase 24.2.1.10.670
3sbhE65Carbonic anhydrase 24.2.1.10.668
1if4FBSCarbonic anhydrase 24.2.1.10.667
3d8wD8WCarbonic anhydrase 24.2.1.10.666
3b4fTUOCarbonic anhydrase 24.2.1.10.663
3dc3AZMCarbonic anhydrase 24.2.1.10.663
1g52F2BCarbonic anhydrase 24.2.1.10.662
3m5eJDRCarbonic anhydrase 24.2.1.10.660
1bn3AL6Carbonic anhydrase 24.2.1.10.657
1if5FBTCarbonic anhydrase 24.2.1.10.655
1if6FBUCarbonic anhydrase 24.2.1.10.654
3mhoJ43Carbonic anhydrase 24.2.1.10.653
1bnuAL3Carbonic anhydrase 24.2.1.10.652
3betCTFCarbonic anhydrase 24.2.1.10.652
1g4jFFBCarbonic anhydrase 24.2.1.10.646
1bnmAL8Carbonic anhydrase 24.2.1.10.645
4itoMPXCarbonic anhydrase 24.2.1.10.643
1g4oBSBCarbonic anhydrase 24.2.1.10.642
3v2jAZMCarbonic anhydrase 24.2.1.10.640
2eu3FF3Carbonic anhydrase 24.2.1.10.635
4ilx1EZCarbonic anhydrase 24.2.1.10.635
4m2rBZ1Carbonic anhydrase 24.2.1.10.628
1zsbAZMCarbonic anhydrase 24.2.1.10.626
4bf6X0QCarbonic anhydrase 24.2.1.10.625
1xpz4TZCarbonic anhydrase 24.2.1.10.624
3mhlJ71Carbonic anhydrase 24.2.1.10.623
3dcsMZMCarbonic anhydrase 24.2.1.10.621
3dd82C7Carbonic anhydrase 24.2.1.10.620
1cnwEG1Carbonic anhydrase 24.2.1.10.619
2wehFB1Carbonic anhydrase 24.2.1.10.619
1kwqSG1Carbonic anhydrase 24.2.1.10.617
1ttm667Carbonic anhydrase 24.2.1.10.617
3hkuTORCarbonic anhydrase 24.2.1.10.614
1i8zINLCarbonic anhydrase 24.2.1.10.612
2h4nAZMCarbonic anhydrase 24.2.1.10.611
3m67E36Carbonic anhydrase 24.2.1.10.611
3n4bWWZCarbonic anhydrase 24.2.1.10.610
1bnvAL7Carbonic anhydrase 24.2.1.10.609
3igpDT7Carbonic anhydrase 24.2.1.10.609
3m2nJ74Carbonic anhydrase 24.2.1.10.607
3ml2SU0Carbonic anhydrase 24.2.1.10.607
3dccD9ZCarbonic anhydrase 24.2.1.10.602
4iwz1GOCarbonic anhydrase 24.2.1.10.602
4n16CHDCarbonic anhydrase 24.2.1.10.599
3ni5C1HCarbonic anhydrase 24.2.1.10.597
1if7SBRCarbonic anhydrase 24.2.1.10.596
3mzcS6ICarbonic anhydrase 24.2.1.10.596
4k13ETSCarbonic anhydrase 24.2.1.10.595
2x7tWZBCarbonic anhydrase 24.2.1.10.594
2wejFB2Carbonic anhydrase 24.2.1.10.593
4kniE1ECarbonic anhydrase 24.2.1.10.593
4itp1GDCarbonic anhydrase 24.2.1.10.592
1cnxEG2Carbonic anhydrase 24.2.1.10.590
3p5lIT5Carbonic anhydrase 24.2.1.10.587
3bl1BL1Carbonic anhydrase 24.2.1.10.586
3n2pAYXCarbonic anhydrase 24.2.1.10.586
1okmSABCarbonic anhydrase 24.2.1.10.582
4mo82VQCarbonic anhydrase 24.2.1.10.582
3t84SG6Carbonic anhydrase 24.2.1.10.581
3mnaDWHCarbonic anhydrase 24.2.1.10.580
4m2vBZ1Carbonic anhydrase 24.2.1.10.580
1cnyEG3Carbonic anhydrase 24.2.1.10.578
3kigDA4Carbonic anhydrase 24.2.1.10.576
3f4xKLTCarbonic anhydrase 24.2.1.10.575
1g45FSBCarbonic anhydrase 24.2.1.10.574
4xiwAZMCarbonic anhydrase, alpha type/0.573
1i9pIOECarbonic anhydrase 24.2.1.10.572
2weoFBWCarbonic anhydrase 24.2.1.10.570
3ffpLC1Carbonic anhydrase 24.2.1.10.570
3oysOYSCarbonic anhydrase 24.2.1.10.570
3oyqOYQCarbonic anhydrase 24.2.1.10.568
4pxxCHDCarbonic anhydrase 24.2.1.10.568
3m98E02Carbonic anhydrase 24.2.1.10.567
2wd2MS5Carbonic anhydrase 24.2.1.10.564
3dbuD8WCarbonic anhydrase 24.2.1.10.564
3n0nP9BCarbonic anhydrase 24.2.1.10.563
3oikWZBCarbonic anhydrase 24.2.1.10.560
3m2yBE0Carbonic anhydrase 24.2.1.10.558
3mdzEZLCarbonic anhydrase 74.2.1.10.557
2x7uWZACarbonic anhydrase 24.2.1.10.556
3oy0OY0Carbonic anhydrase 24.2.1.10.555
3oimVZ5Carbonic anhydrase 24.2.1.10.554
3s8xE59Carbonic anhydrase 24.2.1.10.553
3saxE50Carbonic anhydrase 24.2.1.10.551
2q1qOSPCarbonic anhydrase 24.2.1.10.550
3mhcARZCarbonic anhydrase 24.2.1.10.550
1oklMNSCarbonic anhydrase 24.2.1.10.549
4ht2V50Carbonic anhydrase 124.2.1.10.549
3n3jWWVCarbonic anhydrase 24.2.1.10.546
4bf19FKCarbonic anhydrase 24.2.1.10.546
3m40J45Carbonic anhydrase 24.2.1.10.542
3dcwEZLCarbonic anhydrase 24.2.1.10.541
3mmfD9HCarbonic anhydrase 24.2.1.10.541
4kp8E1GCarbonic anhydrase 124.2.1.10.538
2wegFBVCarbonic anhydrase 24.2.1.10.537
5fltVJJCarbonic anhydrase 24.2.1.10.537
4kp5E1FCarbonic anhydrase 124.2.1.10.533
3f7bAG5Carbonic anhydrase 44.2.1.10.532
3sbiE90Carbonic anhydrase 24.2.1.10.532
1jd0AZMCarbonic anhydrase 124.2.1.10.529
4x5sAZMCarbonic anhydrase (Carbonate dehydratase)/0.529
3nb5R21Carbonic anhydrase 24.2.1.10.526
3rz8RZ8Carbonic anhydrase 24.2.1.10.526
3l14I7BCarbonic anhydrase 24.2.1.10.523
1i9qIOFCarbonic anhydrase 24.2.1.10.522
3f7uAG4Carbonic anhydrase 44.2.1.10.522
3zncBZ1Carbonic anhydrase 44.2.1.10.522
3fw3ETSCarbonic anhydrase 44.2.1.10.521
1eouSMSCarbonic anhydrase 24.2.1.10.517
3m96E38Carbonic anhydrase 24.2.1.10.513
3t82SG4Carbonic anhydrase 24.2.1.10.513
2powI7CCarbonic anhydrase 24.2.1.10.512
1xq04TRCarbonic anhydrase 24.2.1.10.511
3mhiJ90Carbonic anhydrase 24.2.1.10.511
1if8SBSCarbonic anhydrase 24.2.1.10.510
3myqE27Carbonic anhydrase 24.2.1.10.506
1rj6AZMCarbonic anhydrase 144.2.1.10.505
4knmE1ECarbonic anhydrase 134.2.1.10.505
3s9tE49Carbonic anhydrase 24.2.1.10.502
4lu3AZMCarbonic anhydrase 144.2.1.10.502
1x1aSAMC-20 methyltransferase/0.501
4k0zMZMCarbonic anhydrase 24.2.1.10.500
4knjE1FCarbonic anhydrase 24.2.1.10.499
1g54FFBCarbonic anhydrase 24.2.1.10.498
1oq5CELCarbonic anhydrase 24.2.1.10.497
4k0tD9ZCarbonic anhydrase 24.2.1.10.495
4dz7D02Carbonic anhydrase 24.2.1.10.494
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.487
5fl49FKCarbonic anhydrase 94.2.1.10.487
2jkvNAP6-phosphogluconate dehydrogenase, decarboxylating1.1.1.440.486
2qimZEAClass 10 plant pathogenesis-related protein/0.485
4uovAZMCarbonate dehydratase/0.484
4bfxZVXPantothenate kinase2.7.1.330.483
1oknSTBCarbonic anhydrase 24.2.1.10.480
3t85SG7Carbonic anhydrase 24.2.1.10.480
3rsv3RSBeta-secretase 13.4.23.460.478
3uu114BAnthranilate phosphoribosyltransferase/0.478
1ydaAZMCarbonic anhydrase 24.2.1.10.475
4knnE1FCarbonic anhydrase 134.2.1.10.474
3dd0EZLCarbonic anhydrase 24.2.1.10.473
3f03FMNPentaerythritol tetranitrate reductase/0.473
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.472
4giu636Anthranilate phosphoribosyltransferase/0.472
4bftZVTPantothenate kinase2.7.1.330.471
4kbyC2EStimulator of interferon genes protein/0.471
1w6hTITPlasmepsin-23.4.23.390.470
4bfvZVVPantothenate kinase2.7.1.330.470
4a802ANMajor pollen allergen Bet v 1-A/0.468
1h50FMNPentaerythritol tetranitrate reductase/0.467
1xe55FEPlasmepsin-23.4.23.390.467
1xe65FPPlasmepsin-23.4.23.390.467
2rqfJH3Hemolymph juvenile hormone binding protein/0.467
1bwsNDPGDP-L-fucose synthase/0.466
4hu1V13Carbonic anhydrase 134.2.1.10.466
4a87NARMajor pollen allergen Bet v 1-A/0.465
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.464
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.464
4a83DXCMajor pollen allergen Bet v 1-A/0.461
4bfzZVZPantothenate kinase2.7.1.330.461
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.460
3h3r14HCollagen type IV alpha-3-binding protein/0.460
2a9y26AAdenosine kinase2.7.1.200.458
4bfwZVWPantothenate kinase2.7.1.330.458
1h51FMNPentaerythritol tetranitrate reductase/0.457
3lxeTORCarbonic anhydrase 14.2.1.10.457
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.456
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.456
4j8tDOGUncharacterized PhzA/B-like protein PA3332/0.456
2d3aADPGlutamine synthetase root isozyme 36.3.1.20.455
3oadLPORenin3.4.23.150.455
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.454
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.454
4ambDUDPutative glycosyl transferase/0.454
1x1bSAHC-20 methyltransferase/0.453
1xddAAYIntegrin alpha-L/0.453
4jicFMNGTN Reductase/0.453
4q71FADBifunctional protein PutA/0.453
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
3gwfNAPCyclohexanone monooxygenase/0.452
4b4vL34Bifunctional protein FolD/0.452
4v2gITCTetracycline repressor protein class D/0.452
4yp6NAPNicotinamide-nucleotide adenylyltransferase2.7.7.10.452
2yj4ATPCopper-transporting ATPase/0.451
3zvmADPBifunctional polynucleotide phosphatase/kinase2.7.1.780.451
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.451
4xba5GPAprataxin-like protein30.451
1i59ADPChemotaxis protein CheA2.7.13.30.450
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.450
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.450
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.450
3jyqNADQuinate/shikimate dehydrogenase (NAD(+))/0.450
1xl8152Peroxisomal carnitine O-octanoyltransferase2.3.1.1370.449
1xvaSAMGlycine N-methyltransferase2.1.1.200.449
4j33FADKynurenine 3-monooxygenase/0.449
2g5w8PG12-oxophytodienoate reductase 31.3.1.420.448
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.448
4a862ANMajor pollen allergen Bet v 1-A/0.448
2ikuLIYRenin3.4.23.150.447
2xveFADPutative flavin-containing monooxygenase/0.447
3e8xNAPBH1520 protein/0.447
3vt65YIVitamin D3 receptor/0.447
1vbiNADMalate/L-lactate dehydrogenase family protein/0.446
2he5NDPAldo-keto reductase family 1 member C211.1.10.446
2iviACWIsopenicillin N synthase1.21.3.10.446
2qw034Z4-chlorobenzoyl CoA ligase/0.446
3h3qH13Collagen type IV alpha-3-binding protein/0.446
1akbPPDAspartate aminotransferase, mitochondrial2.6.1.10.445
1cqp803Integrin alpha-L/0.444
2fb2SAMGTP 3',8-cyclase4.1.99.180.444
4mlp2CXCryptochrome-2/0.444
3da24MDCarbonic anhydrase 134.2.1.10.443
3hdyGDUUDP-galactopyranose mutase/0.443
1icsFMN12-oxophytodienoate reductase 11.3.1.420.442
2xuqTZ4Acetylcholinesterase3.1.1.70.442
3aezGDPPantothenate kinase2.7.1.330.442
3lqfNADGalactitol dehydrogenase/0.442
3otwCOAPhosphopantetheine adenylyltransferase/0.442
3p62FMNPentaerythritol tetranitrate reductase/0.442
4bfsZVSPantothenate kinase2.7.1.330.442
5dg3U21Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase/0.442
1u1f183Uridine phosphorylase2.4.2.30.441
2gesCOKPantothenate kinase2.7.1.330.441
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
4g3jVNTLanosterol 14-alpha-demethylase/0.441
4g7gVFVLanosterol 14-alpha-demethylase/0.441
4iah1DXAlr2278 protein/0.441
7stdCRPScytalone dehydratase4.2.1.940.441
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.440
2g247IGRenin3.4.23.150.440
2q85973UDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.440
3cmfPDN3-oxo-5-beta-steroid 4-dehydrogenase/0.440
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
5kwvANPPantothenate synthetase/0.440