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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
6tmn 0PI Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
6tmn 0PIThermolysin 3.4.24.27 1.103
3t87 UBZThermolysin 3.4.24.27 0.900
3t8c UBWThermolysin 3.4.24.27 0.884
4h57 0PJThermolysin 3.4.24.27 0.882
3t74 UBYThermolysin 3.4.24.27 0.879
4tmn 0PKThermolysin 3.4.24.27 0.865
3t8h UBSThermolysin 3.4.24.27 0.859
4d9w X32Thermolysin 3.4.24.27 0.856
3fv4 1U4Thermolysin 3.4.24.27 0.848
3fvp UB2Thermolysin 3.4.24.27 0.848
3t8d UBVThermolysin 3.4.24.27 0.842
4b52 RDFBacillolysin / 0.798
3zuk RDFEndopeptidase, peptidase family M13 / 0.751
4cth RDFNeprilysin / 0.742
4zr5 RDFNeprilysin / 0.736
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.681
1qf2 TI3Thermolysin 3.4.24.27 0.666
1r1i TI1Neprilysin / 0.658