scPDB - Distribution of Binding mode Similarity values of 6req entry / Site 2

Distribution of Interaction pattern similarity measured by Grim

You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
6req	3CP	Methylmalonyl-CoA mutase large subunit	5.4.99.2

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
6req	3CP	Methylmalonyl-CoA mutase large subunit	5.4.99.2	1.523
7req	2CP	Methylmalonyl-CoA mutase large subunit	5.4.99.2	1.286
1e1c	DCA	Methylmalonyl-CoA mutase large subunit	5.4.99.2	1.163
1req	DCA	Methylmalonyl-CoA mutase large subunit	5.4.99.2	1.108
1toi	HCI	Aspartate aminotransferase	2.6.1.1	0.650