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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5kbw RBF Riboflavin transporter RibU

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5kbw RBFRiboflavin transporter RibU / 1.081
5j3w FMNSensory box protein / 0.699
5efw FMNNPH1-1 / 0.684
2v1a FMNNPH1-1 / 0.673
4hhd FMNPhototropin-1 2.7.11.1 0.669
4gcm FADThioredoxin reductase 1.8.1.9 0.666
4hj6 FMNLOV protein / 0.664
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.661
2pg0 FADAcyl-CoA dehydrogenase / 0.660
2fzn FADBifunctional protein PutA 1.5.5.2 0.659
5dju FMNNPH1-2 / 0.659
2bkj FMNNADPH-flavin oxidoreductase / 0.658
4irn FADAnaB / 0.658
1x31 FMNSubunit alpha of sarocosine oxidase / 0.655
1x31 FMNSubunit beta of sarcosine oxidase / 0.655
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.654
3ewk FADSensory box histidine kinase/response regulator / 0.654