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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jla NAD Putative short-chain dehydrogenase/reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
5jla NADPutative short-chain dehydrogenase/reductase / 1.172
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 1.002
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.996
2wsb NADGalactitol dehydrogenase / 0.978
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.960
1x7h NDPPutative ketoacyl reductase 1.3.1 0.959
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.954
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.949
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.927
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.926
4dbz NDPPutative ketoacyl reductase 1.3.1 0.926
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.913
3wds NADNADH-dependent quinuclidinone reductase / 0.911
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.910
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.910
4wec NADShort chain dehydrogenase / 0.903
4fn4 NADShort chain dehydrogenase / 0.900
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.897
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.897
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.893
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.891
3sju NDPKeto reductase / 0.891
1w4z NAPPutative ketoacyl reductase 1.3.1 0.882
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.881
3ak4 NADNADH-dependent quinuclidinone reductase / 0.878
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.875
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.866
4yai NAIC alpha-dehydrogenase / 0.865
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.862
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.861
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.860
3sx2 NADUncharacterized protein / 0.860
4yag NAIC alpha-dehydrogenase / 0.860
3qrw NDPPutative ketoacyl reductase 1.3.1 0.856
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.855
1x7g NAPPutative ketoacyl reductase 1.3.1 0.843
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.843
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.842
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.841
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.841
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.840
3s55 NADPutative short-chain dehydrogenase/reductase / 0.840
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.828
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.826
1ae1 NAPTropinone reductase 1 / 0.825
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.825
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.825
1ipe NDPTropinone reductase 2 1.1.1.236 0.824
3l77 NJPShort-chain alcohol dehydrogenase / 0.823
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.818
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.815
3tn7 NJPShort-chain alcohol dehydrogenase / 0.814
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.812
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.812
3tsc NADUncharacterized protein / 0.811
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.810
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.809
2bd0 NAPSepiapterin reductase / 0.809
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.809
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.808
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.808
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.806
3geg NADShort-chain dehydrogenase/reductase SDR / 0.804
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.802
2jah NDPClavaldehyde dehydrogenase / 0.799
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.797
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.796
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.792
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.791
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.790
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.788
4b79 NADProbable short-chain dehydrogenase / 0.787
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.786
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.781
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.779
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.776
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.775
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.775
1pr9 NAPL-xylulose reductase 1.1.1.10 0.774
1iy8 NADLevodione reductase / 0.773
3ai3 NDPNADPH-sorbose reductase / 0.771
3ai2 NDPNADPH-sorbose reductase / 0.767
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.767
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.766
2yy7 NADL-threonine dehydrogenase / 0.763
4hwk NAPSepiapterin reductase 1.1.1.153 0.763
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.762
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.762
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.761
4kwh NAPReductase homolog / 0.758
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.757
4yac NAIC alpha-dehydrogenase / 0.756
2wdz NADGalactitol dehydrogenase / 0.755
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.755
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.755
3d3w NAPL-xylulose reductase 1.1.1.10 0.753
4j7u NAPSepiapterin reductase 1.1.1.153 0.753
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.750
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.749
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.749
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.748
3r3s NADPutative oxidoreductase / 0.746
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.746
1oaa NAPSepiapterin reductase 1.1.1.153 0.744
3p19 NDPPutative blue fluorescent protein / 0.742
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.741
3o26 NDPSalutaridine reductase / 0.741
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.739
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.738
4bmv NAPShort-chain dehydrogenase / 0.738
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.736
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.735
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.735
4qec NAPElxO / 0.735
2dte NAIGlucose 1-dehydrogenase related protein / 0.734
3uce NDPDehydrogenase / 0.734
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.734
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.732
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.732
4qed NAPElxO / 0.731
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.729
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.729
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.729
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.726
2c29 NAPDihydroflavonol 4-reductase / 0.725
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.723
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.720
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.720
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.718
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.718
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.716
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.714
4hxy NDPPlm1 / 0.713
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.711
4u7w NDPMxaA / 0.711
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.710
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.707
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.707
1sny NAPLD36273p / 0.707
3lqf NADGalactitol dehydrogenase / 0.707
1zem NADXylitol dehydrogenase / 0.705
3wmx NADNAD dependent epimerase/dehydratase / 0.705
4j7x NAPSepiapterin reductase 1.1.1.153 0.703
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.701
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.699
4egb NADdTDP-glucose 4,6-dehydratase / 0.699
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
3a9w NADNDP-sugar epimerase / 0.698
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.696
1xkq NDPUncharacterized protein / 0.695
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.695
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.695
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.695
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.694
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.694
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.693
4idg NADPutative UDP-glucose 4-epimerase / 0.693
1i3l NADUDP-glucose 4-epimerase / 0.692
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.691
3ajr NADNDP-sugar epimerase / 0.691
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.690
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.689
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.689
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.689
2ewm NAD(S)-1-Phenylethanol dehydrogenase 1.1.1.311 0.688
3mje NDPAmphB / 0.688
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.688
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.688
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.687
1sby NADAlcohol dehydrogenase 1.1.1.1 0.687
2p5u NADUDP-glucose 4-epimerase / 0.687
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.687
3tox NAPPutative oxidoreductase / 0.686
5jyd NADShort chain dehydrogenase / 0.686
1ek5 NADUDP-glucose 4-epimerase / 0.685
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.684
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.684
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.684
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
3ko8 NADNAD-dependent epimerase/dehydratase / 0.682
3a4v NADNDP-sugar epimerase / 0.681
5d2e NAPMlnE / 0.681
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.680
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.679
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.678
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.678
3ec7 NADInositol 2-dehydrogenase / 0.676
4o1m NADEnoyl-acyl carrier reductase / 0.676
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
3icp NADNAD-dependent epimerase/dehydratase / 0.675
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.674
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.674
3rfx NADUronate dehydrogenase / 0.673
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.673
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.673
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.672
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.672
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.670
4b4o NDPEpimerase family protein SDR39U1 / 0.670
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.670
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.668
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.668
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.668
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.667
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.667
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.666
2p35 SAHTrans-aconitate 2-methyltransferase / 0.666
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.666
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.666
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.665
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.665
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.664
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.664
1wy7 SAHUncharacterized protein / 0.663
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
4clo NAPPteridine reductase / 0.663
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.662
4nec SAHPutative SAM-dependent methyltransferase / 0.662
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.661
2vou FAD2,6-dihydroxypyridine 3-monooxygenase 1.14.13.10 0.660
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.659
5lc1 NADL-threonine 3-dehydrogenase / 0.659
1orr NADCDP-paratose 2-epimerase / 0.658
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
2c20 NADUDP-glucose 4-epimerase / 0.658
2nyu SAMrRNA methyltransferase 2, mitochondrial / 0.658
3kkz SAMUncharacterized protein / 0.658
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
4yuz S4MSpermidine synthase, putative / 0.658
1kia SAMGlycine N-methyltransferase 2.1.1.20 0.657
1sqf SAMRibosomal RNA small subunit methyltransferase B 2.1.1.176 0.657
2e37 NADL-lactate dehydrogenase / 0.657
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.657
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.657
3mj4 FADUDP-galactopyranose mutase / 0.656
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.656
3bmo NAPPteridine reductase / 0.655
3lvf NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.655
3wfj NAD2-dehydropantoate 2-reductase / 0.655
4yuv S4MSpermidine synthase, putative / 0.655
1d2h SAHGlycine N-methyltransferase 2.1.1.20 0.654
1l3i SAHProbable cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) / 0.654
2np6 NEAModification methylase TaqI 2.1.1.72 0.654
2bfo NDPPteridine reductase 1 1.5.1.33 0.653
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.653
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
1cbo FADCholesterol oxidase 1.1.3.6 0.652
1psd NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.651
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
4dl9 NADS-(hydroxymethyl)glutathione dehydrogenase / 0.650
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.650