Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jjs SAH Genome polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5jjs SAHGenome polyprotein / 0.917
5dto SAHGenome polyprotein / 0.816
5jjr SAHGenome polyprotein / 0.760
3p97 SAMGenome polyprotein 2.1.1.56 0.751
3eva SAHGenome polyprotein 2.1.1.56 0.741
3p8z SAHGenome polyprotein 2.1.1.56 0.727
4ctk SAMGenome polyprotein / 0.724
3evc SAHGenome polyprotein 2.1.1.56 0.723
4ctj SAMGenome polyprotein / 0.722
3elu SAMMethyltransferase / 0.720
3lkz SFGGenome polyprotein / 0.720
2p41 SAHGenome polyprotein / 0.708
3p8z 36AGenome polyprotein 2.1.1.56 0.708
2px2 SAHGenome polyprotein 2.7.7.48 0.703
2pxa SAHGenome polyprotein 2.7.7.48 0.702
3eld SFGMethyltransferase / 0.700
3emd SFGMethyltransferase / 0.699
2g1p SAHDNA adenine methylase 2.1.1.72 0.694
2wa2 SAMGenome polyprotein / 0.693
1r6a SAHGenome polyprotein 2.7.7.48 0.691
3evb SAHGenome polyprotein 2.1.1.56 0.691
4gf5 SAHCalS11 / 0.682
3tos SAHCalS11 / 0.680
2p3q SAHGenome polyprotein / 0.675
3ely SAHMethyltransferase / 0.675
2nyu SAMrRNA methyltransferase 2, mitochondrial / 0.674
1wg8 SAMRibosomal RNA small subunit methyltransferase H / 0.673
2px5 SAHGenome polyprotein 2.7.7.48 0.673
2f8l SAMLmo1582 protein / 0.670
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.667
1yf3 SAHDNA adenine methylase / 0.666
4uck SAMLarge structural protein / 0.665
3ldf SAHUncharacterized protein / 0.660
2p1d SAHGenome polyprotein 2.7.7.48 0.658
2xbm SAHGenome polyprotein / 0.657
2oy0 SAHGenome polyprotein / 0.655
4n48 SAMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 2.1.1.57 0.654
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.654
3sgl SAMtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC / 0.653
4ymg SAMPutative SAM-dependent O-methyltranferase / 0.652
4xvy SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.650