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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5iqg GDP Bifunctional AAC/APH 2.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5iqg GDPBifunctional AAC/APH 2.3.1 1.000
5iqi GNPBifunctional AAC/APH 2.3.1 0.837
5iqa GNPBifunctional AAC/APH 2.3.1 0.788
4ork GDPBifunctional AAC/APH 2.3.1 0.786
5iqe GNPBifunctional AAC/APH 2.3.1 0.785
5iqf GDPBifunctional AAC/APH 2.3.1 0.783
5iqd GNPBifunctional AAC/APH 2.3.1 0.770
5iqb GNPBifunctional AAC/APH 2.3.1 0.769
5iqh GNPBifunctional AAC/APH 2.3.1 0.759
3tdw GDPGentamicin resistance protein / 0.734
4n57 ADPAPH(2'')-Id / 0.707
2bkk ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.703
4dt9 GMPAPH(2'')-Id / 0.700
1day GNPCasein kinase II subunit alpha 2.7.11.1 0.694
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.692
3tdv GDPGentamicin resistance protein / 0.692
5byl GCPBifunctional AAC/APH 2.3.1 0.687
1jkk ANPDeath-associated protein kinase 1 2.7.11.1 0.683
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.681
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.674
4dtb GMPAPH(2'')-Id / 0.672
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.668
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.667
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.665
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.663
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.663
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.662
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.661
1m0w ANPGlutathione synthetase 6.3.2.3 0.660
2a19 ANPInterferon-induced, double-stranded RNA-activated protein kinase 2.7.11.1 0.660
3dyn PCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.660
4f99 ADPCell division cycle 7-related protein kinase 2.7.11.1 0.659
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.658
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.657
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.656
1q8y ADPSerine/threonine-protein kinase SKY1 2.7.11.1 0.656
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.654
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
4utd ACPAurora kinase A 2.7.11.1 0.654
4otp ADPSerine/threonine-protein kinase RIO1 2.7.11.1 0.653
4ceg ADPAurora kinase A 2.7.11.1 0.652
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.651
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.651