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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ief NBV Neutral alpha-glucosidase AB 3.2.1.84

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ief NBVNeutral alpha-glucosidase AB 3.2.1.84 1.079
2oeg UPGUDP-glucose pyrophosphorylase / 0.687
3gxf IFMGlucosylceramidase 3.2.1.45 0.680
2xpk Z0MO-GlcNAcase NagJ / 0.669
4m2a UPGUDP-glucose pyrophosphorylase / 0.664
4pd6 URINucleoside permease / 0.654
3tij URINucleoside permease / 0.652
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.651