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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5hy5 FAD Tryptophan 6-halogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5hy5 FADTryptophan 6-halogenase / 1.345
2wet FADTryptophan 5-halogenase / 1.057
2jkc FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.893
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.877
4z43 FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.866
2aqj FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.816
2wes FADTryptophan 5-halogenase / 0.768
2apg FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.756
4z44 FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.697
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.678
2ar8 FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.675
3qe2 FADNADPH--cytochrome P450 reductase / 0.672
3w5u FADFerredoxin / 0.663
3ka7 FADPutative oxidoreductase / 0.662
4gus FADLysine-specific histone demethylase 1B 1 0.661
1kif FADD-amino-acid oxidase 1.4.3.3 0.660
3lov FADProtoporphyrinogen oxidase / 0.659
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.658
4hnb FMNLOV protein / 0.658
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.658
4nmd FDABifunctional protein PutA / 0.654
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.652
4u8n FDAUDP-galactopyranose mutase / 0.652
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.650
2rc5 FADFerredoxin--NADP reductase / 0.650