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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5hgc HCY Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5hgc HCYUncharacterized protein / 1.079
4k7a DHTAndrogen receptor / 0.692
3zuy TCHTransporter / 0.681
2aba STRPentaerythritol tetranitrate reductase / 0.680
1kdm DHTSex hormone-binding globulin / 0.678
3bqd DAYGlucocorticoid receptor / 0.670
3zux TCHTransporter / 0.665
2mm3 CHOGastrotropin / 0.664
1p93 DEXGlucocorticoid receptor / 0.661
2a3i C0RMineralocorticoid receptor / 0.658
3mnp DEXGlucocorticoid receptor / 0.653
2bjf DXCCholoylglycine hydrolase 3.5.1.24 0.652
3tc5 3T5Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 5.2.1.8 0.652
2yhd TESAndrogen receptor / 0.650