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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5fsx ADP Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5fsx ADPUncharacterized protein / 0.967
5fsy AR6Uncharacterized protein / 0.919
2bfr ADP[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.687
5cms APRO-acetyl-ADP-ribose deacetylase / 0.685
3iif APRCore histone macro-H2A.1 / 0.678
4j5r A1RO-acetyl-ADP-ribose deacetylase 1 3.5.1 0.673
3vfq AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.669
5cb5 APRO-acetyl-ADP-ribose deacetylase / 0.667
4abk AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.661
3zl8 ADPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase / 0.659
1txz APRProbable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84 0.653
4na4 A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.652