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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5fkm TDC Tetracycline repressor protein class D

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5fkm TDCTetracycline repressor protein class D / 0.974
5fko TDCTetracycline repressor protein class D / 0.925
5fkn TDCTetracycline repressor protein class D / 0.916
5fkl TDCTetracycline repressor protein class D / 0.901
2o7o DXTTetracycline repressor protein class D / 0.862
2vkv TDCTetracycline repressor protein class D / 0.846
2xrl DXTTetracycline repressor protein class D / 0.844
2xpw OTCTetracycline repressor protein class D / 0.828
2xpu TDCTetracycline repressor protein class D / 0.825
4b3a TACTetracycline repressor protein class D / 0.812
4d7m TDCTetracycline repressor protein class D / 0.811
4abz T1CTetracycline repressor protein class D / 0.761
1ork ATCTetracycline repressor protein class D / 0.757
2trt TACTetracycline repressor protein class D / 0.751
2vke TACTetracycline repressor protein class D / 0.749
5fkk TDCTetracycline repressor protein class D / 0.742
2xpv MIYTetracycline repressor protein class D / 0.738
2vpr TDCTetracycline repressor protein class H / 0.722
4aux XTCTetracycline repressor protein class D / 0.722
2tct CTCTetracycline repressor protein class D / 0.715
2fj1 CTCTetracycline repressor protein class D / 0.697
2xb5 I7TTetracycline repressor protein class D / 0.681
4v2g CTCTetracycline repressor protein class D / 0.681