Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5fkl TDC Tetracycline repressor protein class D

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5fkl TDCTetracycline repressor protein class D / 0.989
5fkm TDCTetracycline repressor protein class D / 0.901
5fko TDCTetracycline repressor protein class D / 0.896
4d7m TDCTetracycline repressor protein class D / 0.892
2xpw OTCTetracycline repressor protein class D / 0.862
4b3a TACTetracycline repressor protein class D / 0.862
2xpu TDCTetracycline repressor protein class D / 0.843
2trt TACTetracycline repressor protein class D / 0.839
5fkn TDCTetracycline repressor protein class D / 0.838
2vkv TDCTetracycline repressor protein class D / 0.834
2xrl DXTTetracycline repressor protein class D / 0.834
2o7o DXTTetracycline repressor protein class D / 0.833
1ork ATCTetracycline repressor protein class D / 0.790
2vke TACTetracycline repressor protein class D / 0.778
2tct CTCTetracycline repressor protein class D / 0.776
2xpv MIYTetracycline repressor protein class D / 0.754
4abz T1CTetracycline repressor protein class D / 0.751
2fj1 CTCTetracycline repressor protein class D / 0.735
2vpr TDCTetracycline repressor protein class H / 0.727
4aux XTCTetracycline repressor protein class D / 0.726
5fkk TDCTetracycline repressor protein class D / 0.720
2xb5 I7TTetracycline repressor protein class D / 0.681