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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5fkk TDC Tetracycline repressor protein class D

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5fkk TDCTetracycline repressor protein class D / 0.954
2vkv TDCTetracycline repressor protein class D / 0.834
4d7m TDCTetracycline repressor protein class D / 0.821
5fko TDCTetracycline repressor protein class D / 0.809
5fkn TDCTetracycline repressor protein class D / 0.752
2trt TACTetracycline repressor protein class D / 0.742
5fkm TDCTetracycline repressor protein class D / 0.742
4b3a TACTetracycline repressor protein class D / 0.735
2xpu TDCTetracycline repressor protein class D / 0.728
2o7o DXTTetracycline repressor protein class D / 0.721
5fkl TDCTetracycline repressor protein class D / 0.720
2xpw OTCTetracycline repressor protein class D / 0.718
2xb5 I7TTetracycline repressor protein class D / 0.690
4abz T1CTetracycline repressor protein class D / 0.689
2vke TACTetracycline repressor protein class D / 0.679
1ork ATCTetracycline repressor protein class D / 0.663
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.650