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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5f8e SAH Possible transcriptional regulatory protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5f8e SAHPossible transcriptional regulatory protein / 0.913
3o7w SAMLeucine carboxyl methyltransferase 1 2.1.1.233 0.675
3iei SAHLeucine carboxyl methyltransferase 1 2.1.1.233 0.674
1rje SAHLeucine carboxyl methyltransferase 1 2.1.1.233 0.669
5f8f SFGPossible transcriptional regulatory protein / 0.666
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.663
4q7f 3D1Uncharacterized protein / 0.662
3dlc SAMSAM (And some other nucleotide) binding motif:Generic methyltransferase / 0.660
3sgl SAMtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC / 0.652
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.652
5e8j SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.651