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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5f2r ACP 78 kDa glucose-regulated protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5f2r ACP78 kDa glucose-regulated protein / 1.069
1ngj ANPHeat shock cognate 71 kDa protein / 0.837
3ldo ANP78 kDa glucose-regulated protein / 0.829
2qwl ADPHeat shock cognate 71 kDa protein / 0.821
1ats ADPHeat shock cognate 71 kDa protein / 0.818
3hsc ADPHeat shock cognate 71 kDa protein / 0.817
1ngc ADPHeat shock cognate 71 kDa protein / 0.814
5f1x ATP78 kDa glucose-regulated protein / 0.812
2qwn ADPHeat shock cognate 71 kDa protein / 0.803
1nge ATPHeat shock cognate 71 kDa protein / 0.786
1ngi ANPHeat shock cognate 71 kDa protein / 0.786
1ngh ATPHeat shock cognate 71 kDa protein / 0.784
3ldl ATP78 kDa glucose-regulated protein / 0.776
1ngb ADPHeat shock cognate 71 kDa protein / 0.775
1ngd ADPHeat shock cognate 71 kDa protein / 0.766
3fe1 ADPHeat shock 70 kDa protein 6 / 0.762
1atr ADPHeat shock cognate 71 kDa protein / 0.752
2qwq ADPHeat shock cognate 71 kDa protein / 0.752
2qwr ANPHeat shock cognate 71 kDa protein / 0.716
3ule ATPActin-related protein 2 / 0.693
4h5t ADPHeat shock cognate 71 kDa protein / 0.690
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.683
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.683
4pkh ADPActin, alpha skeletal muscle / 0.683
4a62 ANPPlasmid segregation protein ParM / 0.679
3d2e ATPHeat shock protein homolog SSE1 / 0.672
3a5m ATPMajor actin / 0.656
3wt0 ATPCell division protein FtsA / 0.652