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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ewk P34 Putative secreted protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ewk P34Putative secreted protein / 0.874
5ds3 09LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.693
1pax DHQPoly [ADP-ribose] polymerase 1 2.4.2.30 0.685
4fsz HK8Serine/threonine-protein kinase Chk1 2.7.11.1 0.685
4avw G18Tankyrase-2 2.4.2.30 0.681
4tjy 3GNTankyrase-2 2.4.2.30 0.678
4avu LDRTankyrase-2 2.4.2.30 0.676
4gv2 5MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.674
4but 31FTankyrase-2 2.4.2.30 0.672
4gv0 8MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.672
4buv 16ITankyrase-2 2.4.2.30 0.671
4bu9 08CTankyrase-2 2.4.2.30 0.670
4gv7 MEWPoly [ADP-ribose] polymerase 1 2.4.2.30 0.669
3ce0 P34Poly [ADP-ribose] polymerase 3 2.4.2.30 0.668
5dsy UHBPoly [ADP-ribose] polymerase 2 2.4.2.30 0.668
3u9y 09LTankyrase-2 2.4.2.30 0.667
4hhz 15SPoly [ADP-ribose] polymerase 1 2.4.2.30 0.667
3gn7 3GNPoly [ADP-ribose] polymerase 1 2.4.2.30 0.666
4bud 29FTankyrase-2 2.4.2.30 0.666
1efy BZCPoly [ADP-ribose] polymerase 1 2.4.2.30 0.663
3l3m A92Poly [ADP-ribose] polymerase 1 2.4.2.30 0.663
3c4h DRLPoly [ADP-ribose] polymerase 3 2.4.2.30 0.662
4pnr G18Tankyrase-2 2.4.2.30 0.661
4gv4 MEJPoly [ADP-ribose] polymerase 3 2.4.2.30 0.660
2rcw AAIPoly [ADP-ribose] polymerase 1 2.4.2.30 0.659
4buw F33Tankyrase-2 2.4.2.30 0.659
4f1q 0RZPoly [ADP-ribose] polymerase 14 2.4.2.30 0.658
4msk 2C8Tankyrase-1 2.4.2.30 0.658
4buf F36Tankyrase-2 2.4.2.30 0.657
4bui W2ETankyrase-2 2.4.2.30 0.656
4bux F35Tankyrase-2 2.4.2.30 0.655
1xk9 P34Exotoxin A 2.4.2.36 0.654
4bue JQFTankyrase-2 2.4.2.30 0.654
4bus 32FTankyrase-2 2.4.2.30 0.652
4fsy HK7Serine/threonine-protein kinase Chk1 2.7.11.1 0.651