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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5e9e ANP Myosin heavy chain kinase A 2.7.11.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 1.095
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.848
1ia9 ANPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.744
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.742
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.740
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.740
2zdg ADPD-alanine--D-alanine ligase / 0.711
3k5h ATPPhosphoribosyl-aminoimidazole carboxylase / 0.711
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.707
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.707
4ffm ADPUncharacterized protein / 0.706
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.703
3g8d ADPBiotin carboxylase 6.3.4.14 0.701
1pk8 ATPSynapsin-1 / 0.700
1iah ADPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.699
2r7n ADP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.692
4mam A12N5-carboxyaminoimidazole ribonucleotide synthase / 0.692
3lmi ATPMyosin heavy chain kinase A 2.7.11.7 0.688
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.686
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.685
3eps ATPIsocitrate dehydrogenase kinase/phosphatase / 0.681
4ffl ADPUncharacterized protein / 0.676
2if8 ADPInositol polyphosphate multikinase 2.7.1.151 0.675
3r5f ATPD-alanine--D-alanine ligase / 0.675
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.670
4qpm ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.664
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.663
2wq7 FADRE11660p / 0.663
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.662
4h3q ANPMitogen-activated protein kinase 1 2.7.11.24 0.660
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.659
2pul ACPMethylthioribose kinase 2.7.1.100 0.659
4mv3 ACPBiotin carboxylase 6.3.4.14 0.659
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.655
2pun ACPMethylthioribose kinase 2.7.1.100 0.653
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.653
2pup ADPMethylthioribose kinase 2.7.1.100 0.651
3akk ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.651
3wo0 ADPAlanine--anticapsin ligase / 0.651