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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ds3 09L Poly [ADP-ribose] polymerase 1 2.4.2.30

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ds3 09LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.992
4tvj 09LPoly [ADP-ribose] polymerase 2 2.4.2.30 0.881
3c49 KU8Poly [ADP-ribose] polymerase 3 2.4.2.30 0.795
4gv2 5MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.733
4gv4 MEJPoly [ADP-ribose] polymerase 3 2.4.2.30 0.726
3c4h DRLPoly [ADP-ribose] polymerase 3 2.4.2.30 0.725
3l3l L3LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.725
4tjy 3GNTankyrase-2 2.4.2.30 0.725
2rcw AAIPoly [ADP-ribose] polymerase 1 2.4.2.30 0.724
4tkg 09LTankyrase-2 2.4.2.30 0.724
4r5w XAVPoly [ADP-ribose] polymerase 1 2.4.2.30 0.719
4avu LDRTankyrase-2 2.4.2.30 0.711
2rd6 78PPoly [ADP-ribose] polymerase 1 2.4.2.30 0.709
4gv7 MEWPoly [ADP-ribose] polymerase 1 2.4.2.30 0.709
5dsy UHBPoly [ADP-ribose] polymerase 2 2.4.2.30 0.703
3l3m A92Poly [ADP-ribose] polymerase 1 2.4.2.30 0.701
4avw G18Tankyrase-2 2.4.2.30 0.701
4gv0 8MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.697
5ewk P34Putative secreted protein / 0.693
3gn7 3GNPoly [ADP-ribose] polymerase 1 2.4.2.30 0.691
3u9y 09LTankyrase-2 2.4.2.30 0.688
4f1q 0RZPoly [ADP-ribose] polymerase 14 2.4.2.30 0.686
4mt9 2D6Tankyrase-1 2.4.2.30 0.686
4f1l 0RYPoly [ADP-ribose] polymerase 14 2.4.2.30 0.685
4pnm NU1Tankyrase-2 2.4.2.30 0.683
4pnr G18Tankyrase-2 2.4.2.30 0.682
4bj9 UHBTankyrase-2 2.4.2.30 0.679
4bjc RPBTankyrase-2 2.4.2.30 0.678
4bus 32FTankyrase-2 2.4.2.30 0.677
4but 31FTankyrase-2 2.4.2.30 0.674
4bux F35Tankyrase-2 2.4.2.30 0.674
1uk1 FRQPoly [ADP-ribose] polymerase 1 2.4.2.30 0.671
3kr8 XAVTankyrase-2 2.4.2.30 0.671
4bu9 08CTankyrase-2 2.4.2.30 0.671
4buv 16ITankyrase-2 2.4.2.30 0.671
4hhz 15SPoly [ADP-ribose] polymerase 1 2.4.2.30 0.665
1efy BZCPoly [ADP-ribose] polymerase 1 2.4.2.30 0.660
4buw F33Tankyrase-2 2.4.2.30 0.659
4l34 1VGTankyrase-2 2.4.2.30 0.659
4l09 1URTankyrase-2 2.4.2.30 0.658
4l0t 1V0Tankyrase-2 2.4.2.30 0.658
4buf F36Tankyrase-2 2.4.2.30 0.657
4bui W2ETankyrase-2 2.4.2.30 0.657
4l0v 1V1Tankyrase-2 2.4.2.30 0.657
4bue JQFTankyrase-2 2.4.2.30 0.656
4hl5 15WTankyrase-2 2.4.2.30 0.656
4kzl 20DTankyrase-2 2.4.2.30 0.656
4kzu A73Tankyrase-2 2.4.2.30 0.656
5aku 29FTankyrase-2 2.4.2.30 0.655
4l0s 1UZTankyrase-2 2.4.2.30 0.654
4l2k 1V8Tankyrase-2 2.4.2.30 0.652
4l33 F70Tankyrase-2 2.4.2.30 0.652
4bs4 A64Tankyrase-2 2.4.2.30 0.650
4buu F38Tankyrase-2 2.4.2.30 0.650
4li8 1XQTankyrase-1 2.4.2.30 0.650