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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5drd ATP Aurora kinase A 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5drd ATPAurora kinase A 2.7.11.1 0.985
5dt3 ATPAurora kinase A 2.7.11.1 0.878
4ceg ADPAurora kinase A 2.7.11.1 0.873
5dn3 ATPAurora kinase A 2.7.11.1 0.873
4dee ADPAurora kinase A 2.7.11.1 0.853
5dos ATPAurora kinase A 2.7.11.1 0.843
5dnr ATPAurora kinase A 2.7.11.1 0.822
5dr2 ATPAurora kinase A 2.7.11.1 0.817
1mq4 ADPAurora kinase A 2.7.11.1 0.814
4qpm ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.807
5dt4 ATPAurora kinase A 2.7.11.1 0.803
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.799
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.799
4r8q ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.792
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.788
4dn5 AGSMitogen-activated protein kinase kinase kinase 14 2.7.11.25 0.782
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.778
3c4z ADPRhodopsin kinase / 0.776
4utd ACPAurora kinase A 2.7.11.1 0.774
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.772
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.771
4krc AGSCyclin-dependent protein kinase PHO85 2.7.11.22 0.764
4bn1 ADPAurora kinase A 2.7.11.1 0.761
3qc9 ADPRhodopsin kinase / 0.760
1ig1 ANPDeath-associated protein kinase 1 2.7.11.1 0.759
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.759
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.758
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.758
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.758
2rio ADPSerine/threonine-protein kinase/endoribonuclease IRE1 2.7.11.1 0.754
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.751
1q8y ADPSerine/threonine-protein kinase SKY1 2.7.11.1 0.750
4f99 ADPCell division cycle 7-related protein kinase 2.7.11.1 0.749
1o6y ACPSerine/threonine-protein kinase PknB 2.7.11.1 0.748
2xuu ADPDeath-associated protein kinase 1 2.7.11.1 0.748
4qny ANPMitogen activated protein kinase, putative / 0.748
1jkk ANPDeath-associated protein kinase 1 2.7.11.1 0.746
5e92 ANPTGF-beta receptor type-2 2.7.11.30 0.746
2dwb ANPAurora kinase A 2.7.11.1 0.744
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.739
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.739
3c50 ADPRhodopsin kinase / 0.738
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.738
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.737
4k33 ACPFibroblast growth factor receptor 3 2.7.10.1 0.737
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.736
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.735
3dfc ANPDeath-associated protein kinase 1 2.7.11.1 0.735
2pui ADPMethylthioribose kinase 2.7.1.100 0.734
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.731
3gu4 ANPDeath-associated protein kinase 1 2.7.11.1 0.731
3cly ACPFibroblast growth factor receptor 2 / 0.730
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.727
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.726
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.725
4gvj ADPNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.724
5awm ANPStress-activated protein kinase JNK 2.7.11.24 0.724
5ce3 ADPProtein kinase YopO / 0.724
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.723
2pyw ADPMethylthioribose kinase 2.7.1.100 0.723
2y9q ANPMitogen-activated protein kinase 1 2.7.11.24 0.723
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.720
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.719
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.719
2pup ADPMethylthioribose kinase 2.7.1.100 0.719
4nif ANPMitogen-activated protein kinase 1 2.7.11.24 0.717
3niz ADPCdc2-like CDK2/CDC28 like protein kinase / 0.715
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.715
1ol5 ADPAurora kinase A 2.7.11.1 0.714
1ol6 ATPAurora kinase A 2.7.11.1 0.713
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.713
1zth ADPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.712
2pz5 ACPFibroblast growth factor receptor 2 / 0.712
4nm7 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.712
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.711
4fmq ANPMitogen-activated protein kinase 1 2.7.11.24 0.711
4wbb ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.711
2olc ADPMethylthioribose kinase 2.7.1.100 0.710
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.709
5dmz ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.709
4nm5 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.708
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.707
2pul ACPMethylthioribose kinase 2.7.1.100 0.704
4bfm ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.704
5cvf ATPCasein kinase II subunit alpha 2.7.11.1 0.704
3o7l ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.703
3ori AGSSerine/threonine protein kinase / 0.703
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.703
4ej7 ATPAminoglycoside 3'-phosphotransferase AphA1-IAB / 0.702
3bu5 ATPInsulin receptor 2.7.10.1 0.701
3t8o ATPRhodopsin kinase / 0.699
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.698
1j7u ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.697
1pyx ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.697
1qmz ATPCyclin-dependent kinase 2 2.7.11.22 0.697
2cci ATPCyclin-dependent kinase 2 2.7.11.22 0.697
4o4e ATPKinase / 0.697
1j1b ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.695
4xlv ACPInsulin receptor 2.7.10.1 0.695
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.694
3igo ANPCalmodulin-domain protein kinase 1, putative / 0.693
2qo7 ANPEphrin type-A receptor 3 2.7.10.1 0.692
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.692
3nsz ANPCasein kinase II subunit alpha 2.7.11.1 0.692
3oro AGSSerine/threonine protein kinase / 0.692
3x2u ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.692
4ysj ADPCalmodulin-like domain protein kinase / 0.690
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.688
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.687
4n57 ADPAPH(2'')-Id / 0.687
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.686
4btj ATPTau-tubulin kinase 1 2.7.11.1 0.686
4ic7 ANPMitogen-activated protein kinase 7 2.7.11.24 0.686
4y0x ADPSerine/threonine-protein kinase PknG 2.7.11.1 0.686
4jqe ANPCasein kinase II subunit alpha 2.7.11.1 0.685
1tqm ANPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.684
2py3 ACPFibroblast growth factor receptor 2 / 0.684
3udz ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.684
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.683
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.683
4y12 AGSSerine/threonine-protein kinase PknG 2.7.11.1 0.682
2bkk ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.681
2pzp ACPFibroblast growth factor receptor 2 / 0.681
2qoq ANPEphrin type-A receptor 3 2.7.10.1 0.681
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.680
5iqe GNPBifunctional AAC/APH 2.3.1 0.680
3akk ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.679
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
4gyi ADPUncharacterized protein / 0.679
3c4w ATPRhodopsin kinase / 0.678
4yhj AN2G protein-coupled receptor kinase 4 2.7.11.16 0.678
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.677
4bl1 ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.677
4btj ADPTau-tubulin kinase 1 2.7.11.1 0.677
5cvh ADPCasein kinase II subunit alpha 2.7.11.1 0.677
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.676
3tdw GDPGentamicin resistance protein / 0.676
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.676
1mru AGSSerine/threonine-protein kinase PknB 2.7.11.1 0.675
3akl ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.675
3r5f ATPD-alanine--D-alanine ligase / 0.674
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.674
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.674
4otp ADPSerine/threonine-protein kinase RIO1 2.7.11.1 0.673
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.672
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.672
4iay ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
4o0u ADNAurora kinase A 2.7.11.1 0.672
4ork GDPBifunctional AAC/APH 2.3.1 0.672
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
3orm AGSSerine/threonine protein kinase / 0.671
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.671
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.671
3g51 ANPRibosomal protein S6 kinase alpha-3 2.7.11.1 0.670
4ekk ANPRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.670
1tqp ATPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.669
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.669
4lfi GNPCasein kinase II subunit alpha 2.7.11.1 0.669
5iqi GNPBifunctional AAC/APH 2.3.1 0.669
2wqe ADPAurora kinase A 2.7.11.1 0.668
3q5i ANPProtein kinase, putative / 0.668
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
1ol7 ADPAurora kinase A 2.7.11.1 0.667
4h3q ANPMitogen-activated protein kinase 1 2.7.11.24 0.667
3mia ANPCyclin-dependent kinase 9 2.7.11.22 0.666
1pkg ADPMast/stem cell growth factor receptor Kit 2.7.10.1 0.665
1cm8 ANPMitogen-activated protein kinase 12 / 0.664
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.664
4ux9 ANPMitogen-activated protein kinase 8 2.7.11.24 0.664
1cdk ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.662
4pds ANPSerine/threonine-protein kinase RAD53 2.7.12.1 0.662
5iqf GDPBifunctional AAC/APH 2.3.1 0.662
1u54 ACPActivated CDC42 kinase 1 / 0.661
4jr7 GNPCasein kinase II subunit alpha 2.7.11.1 0.661
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.660
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.658
2qo9 ANPEphrin type-A receptor 3 2.7.10.1 0.657
1m0w ANPGlutathione synthetase 6.3.2.3 0.656
5byl GCPBifunctional AAC/APH 2.3.1 0.655
5eg3 ACPFibroblast growth factor receptor 2 / 0.655
2io7 ANPBifunctional glutathionylspermidine synthetase/amidase / 0.654
4dh3 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
4iir ANPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.654
1mp8 ADPFocal adhesion kinase 1 2.7.10.2 0.653
1w2d ADPInositol-trisphosphate 3-kinase A 2.7.1.127 0.653
3idc ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.653
4ib3 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.652
2pml ANPUncharacterized protein / 0.650