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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5dp2 NAP CurF

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5dp2 NAPCurF / 1.325
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.826
1qor NDPQuinone oxidoreductase 1 / 0.769
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.756
3jyn NDPQuinone oxidoreductase / 0.735
2c0c NAPProstaglandin reductase 3 1 0.712
5doz NDPJamJ / 0.711
2zb3 NDPProstaglandin reductase 2 1.3.1.48 0.710
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.699
2y05 NAPProstaglandin reductase 1 / 0.690
4hfm NAP2-alkenal reductase (NADP(+)-dependent) / 0.683
4k28 NADShikimate dehydrogenase family protein / 0.681
4y0k NAPAntE / 0.677
1iyz NDPProbable quinone oxidoreductase / 0.669
2j8z NAPQuinone oxidoreductase PIG3 1 0.668
2oby NAPQuinone oxidoreductase PIG3 1 0.668
4y1b NAPAntE / 0.666
2cy0 NAPShikimate dehydrogenase (NADP(+)) / 0.661
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.660
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.660
4c4o NADSADH / 0.659
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.656
5env NADAlcohol dehydrogenase 1 1.1.1.1 0.651