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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5dn3 ATP Aurora kinase A 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5dn3 ATPAurora kinase A 2.7.11.1 0.996
5dt3 ATPAurora kinase A 2.7.11.1 0.948
5dr2 ATPAurora kinase A 2.7.11.1 0.936
4dee ADPAurora kinase A 2.7.11.1 0.903
1mq4 ADPAurora kinase A 2.7.11.1 0.883
4ceg ADPAurora kinase A 2.7.11.1 0.879
5drd ATPAurora kinase A 2.7.11.1 0.873
4utd ACPAurora kinase A 2.7.11.1 0.858
5dnr ATPAurora kinase A 2.7.11.1 0.854
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.846
4qpm ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.838
4r8q ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.838
5dt4 ATPAurora kinase A 2.7.11.1 0.833
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.825
4krc AGSCyclin-dependent protein kinase PHO85 2.7.11.22 0.823
5dos ATPAurora kinase A 2.7.11.1 0.822
4dn5 AGSMitogen-activated protein kinase kinase kinase 14 2.7.11.25 0.819
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.814
2dwb ANPAurora kinase A 2.7.11.1 0.811
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.800
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.796
4gvj ADPNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.791
3c4z ADPRhodopsin kinase / 0.790
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.789
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.789
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.789
2xuu ADPDeath-associated protein kinase 1 2.7.11.1 0.787
4f99 ADPCell division cycle 7-related protein kinase 2.7.11.1 0.786
3c50 ADPRhodopsin kinase / 0.785
4nm7 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.782
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.781
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.781
3qc9 ADPRhodopsin kinase / 0.781
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.780
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.780
1ol5 ADPAurora kinase A 2.7.11.1 0.779
5e92 ANPTGF-beta receptor type-2 2.7.11.30 0.778
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.773
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.772
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.772
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.771
1ig1 ANPDeath-associated protein kinase 1 2.7.11.1 0.770
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.770
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.769
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.768
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.768
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.765
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.764
3bu5 ATPInsulin receptor 2.7.10.1 0.761
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.761
1q8y ADPSerine/threonine-protein kinase SKY1 2.7.11.1 0.759
5awm ANPStress-activated protein kinase JNK 2.7.11.24 0.759
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.758
4gyi ADPUncharacterized protein / 0.758
4k33 ACPFibroblast growth factor receptor 3 2.7.10.1 0.757
4nm5 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.757
2pui ADPMethylthioribose kinase 2.7.1.100 0.754
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.753
4ysj ADPCalmodulin-like domain protein kinase / 0.752
2pyw ADPMethylthioribose kinase 2.7.1.100 0.750
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.750
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.749
4qny ANPMitogen activated protein kinase, putative / 0.749
1j7u ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.748
1daw ANPCasein kinase II subunit alpha 2.7.11.1 0.747
2bkk ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.747
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.746
2pup ADPMethylthioribose kinase 2.7.1.100 0.746
4aw1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.745
4eoo ATPCyclin-dependent kinase 2 2.7.11.22 0.745
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.745
1ol6 ATPAurora kinase A 2.7.11.1 0.744
5ce3 ADPProtein kinase YopO / 0.744
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.742
1pyx ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.741
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.739
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.736
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.735
1qmz ATPCyclin-dependent kinase 2 2.7.11.22 0.733
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.733
4xlv ACPInsulin receptor 2.7.10.1 0.732
4fmq ANPMitogen-activated protein kinase 1 2.7.11.24 0.731
4lfi GNPCasein kinase II subunit alpha 2.7.11.1 0.731
2pun ACPMethylthioribose kinase 2.7.1.100 0.730
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.729
4bn1 ADPAurora kinase A 2.7.11.1 0.728
1jkk ANPDeath-associated protein kinase 1 2.7.11.1 0.727
2rio ADPSerine/threonine-protein kinase/endoribonuclease IRE1 2.7.11.1 0.727
4ic7 ANPMitogen-activated protein kinase 7 2.7.11.24 0.726
1o6y ACPSerine/threonine-protein kinase PknB 2.7.11.1 0.722
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.722
2olc ADPMethylthioribose kinase 2.7.1.100 0.722
3dfc ANPDeath-associated protein kinase 1 2.7.11.1 0.721
3t8o ATPRhodopsin kinase / 0.721
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.720
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.720
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.720
2pz5 ACPFibroblast growth factor receptor 2 / 0.719
3cly ACPFibroblast growth factor receptor 2 / 0.718
3udz ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.717
4nif ANPMitogen-activated protein kinase 1 2.7.11.24 0.715
4x6r ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.715
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.714
3g51 ANPRibosomal protein S6 kinase alpha-3 2.7.11.1 0.713
4jr7 GNPCasein kinase II subunit alpha 2.7.11.1 0.713
1j1b ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.712
1cdk ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.710
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.710
2y9q ANPMitogen-activated protein kinase 1 2.7.11.24 0.709
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.708
2pml ANPUncharacterized protein / 0.708
4ib3 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.708
4o0u ADNAurora kinase A 2.7.11.1 0.707
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.705
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.704
3oro AGSSerine/threonine protein kinase / 0.704
5cvh ADPCasein kinase II subunit alpha 2.7.11.1 0.704
1q24 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.703
3nsz ANPCasein kinase II subunit alpha 2.7.11.1 0.703
2a19 ANPInterferon-induced, double-stranded RNA-activated protein kinase 2.7.11.1 0.700
4btj ATPTau-tubulin kinase 1 2.7.11.1 0.700
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.699
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.699
4iir ANPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.699
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.698
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.698
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.697
4fu0 ADPD-alanine--D-alanine ligase / 0.697
2pzp ACPFibroblast growth factor receptor 2 / 0.696
3ori AGSSerine/threonine protein kinase / 0.696
1mru AGSSerine/threonine-protein kinase PknB 2.7.11.1 0.694
4ork GDPBifunctional AAC/APH 2.3.1 0.694
4btj ADPTau-tubulin kinase 1 2.7.11.1 0.693
4dh3 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.692
3c4w ATPRhodopsin kinase / 0.690
4o4f ATPKinase / 0.690
1day GNPCasein kinase II subunit alpha 2.7.11.1 0.689
2qo7 ANPEphrin type-A receptor 3 2.7.10.1 0.689
4iay ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.689
4oac ADPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.689
2qoq ANPEphrin type-A receptor 3 2.7.10.1 0.688
2xan ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.688
1tqm ANPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.685
1zth ADPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.685
4q5h ANPProtein kinase OspG 2.7 0.685
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.684
4ekk ANPRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.684
5iqi GNPBifunctional AAC/APH 2.3.1 0.684
3idc ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.683
4wbb ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.683
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.682
3niz ADPCdc2-like CDK2/CDC28 like protein kinase / 0.682
3tdw GDPGentamicin resistance protein / 0.682
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.681
4o0w ADNAurora kinase A 2.7.11.1 0.681
4pds ANPSerine/threonine-protein kinase RAD53 2.7.12.1 0.681
4yhj AN2G protein-coupled receptor kinase 4 2.7.11.16 0.681
5iqa GNPBifunctional AAC/APH 2.3.1 0.681
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.680
5iqe GNPBifunctional AAC/APH 2.3.1 0.680
2xrw ANPMitogen-activated protein kinase 8 2.7.11.24 0.679
2qo9 ANPEphrin type-A receptor 3 2.7.10.1 0.678
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
4o4e ATPKinase / 0.677
3akl ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.676
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.676
2cci ATPCyclin-dependent kinase 2 2.7.11.22 0.674
3w8q AGSDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.674
2py3 ACPFibroblast growth factor receptor 2 / 0.673
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.669
4fg7 ATPCalcium/calmodulin-dependent protein kinase type 1 2.7.11.17 0.669
4y0x ADPSerine/threonine-protein kinase PknG 2.7.11.1 0.669
1jnk ANPMitogen-activated protein kinase 10 2.7.11.24 0.668
3akk ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.668
3igo ANPCalmodulin-domain protein kinase 1, putative / 0.668
3ork AGSSerine/threonine protein kinase / 0.667
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.667
5eg3 ACPFibroblast growth factor receptor 2 / 0.667
5iqh GNPBifunctional AAC/APH 2.3.1 0.667
1ol7 ADPAurora kinase A 2.7.11.1 0.666
3o7l ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.666
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.666
4jqe ANPCasein kinase II subunit alpha 2.7.11.1 0.666
4azw ATPO-antigen chain terminator bifunctional methyltransferase/kinase WbdD / 0.664
5iqb GNPBifunctional AAC/APH 2.3.1 0.663
3a8w ATPProtein kinase C iota type 2.7.11.13 0.662
4pl3 ADPSerine/threonine-protein kinase/endoribonuclease IRE1 2.7.11.1 0.662
4s33 ANPMitogen-activated protein kinase 1 2.7.11.24 0.662
1m0w ANPGlutathione synthetase 6.3.2.3 0.661
3q5i ANPProtein kinase, putative / 0.661
4lv7 ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.661
5iqd GNPBifunctional AAC/APH 2.3.1 0.661
4otp ADPSerine/threonine-protein kinase RIO1 2.7.11.1 0.660
4ffm ADPUncharacterized protein / 0.659
4ux9 ANPMitogen-activated protein kinase 8 2.7.11.24 0.659
2vuw 5IDSerine/threonine-protein kinase haspin 2.7.11.1 0.658
2wqe ADPAurora kinase A 2.7.11.1 0.658
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.658
4ifc ADPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.658
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.657
2itx ANPEpidermal growth factor receptor 2.7.10.1 0.656
1u5r ATPSerine/threonine-protein kinase TAO2 2.7.11.1 0.655
2pul ACPMethylthioribose kinase 2.7.1.100 0.655
4o1p ANPRibonuclease L / 0.655
2itv ANPEpidermal growth factor receptor 2.7.10.1 0.654
3nie ANPMitogen-activated protein kinase / 0.654
3nyn SGVG protein-coupled receptor kinase 6 2.7.11.16 0.654
3r5f ATPD-alanine--D-alanine ligase / 0.654
4axf ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.654
4ffl ADPUncharacterized protein / 0.654
3g6w GTPUracil phosphoribosyltransferase 2.4.2.9 0.653
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.653
4bfm ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.653
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.653
2zoq 5IDMitogen-activated protein kinase 3 2.7.11.24 0.652
3llt ANPProtein serine/threonine kinase-1 / 0.652
3wow ANPCasein kinase II subunit alpha 2.7.11.1 0.652
4ocp ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.652
3mia ANPCyclin-dependent kinase 9 2.7.11.22 0.651
3rv4 ADPBiotin carboxylase 6.3.4.14 0.651
4axd ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.651