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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5dkk FMN Predicted protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5dkk FMNPredicted protein / 1.102
5efw FMNNPH1-1 / 0.777
2v0u FMNNPH1-1 / 0.771
4wf0 FMNNPH1-1 / 0.770
5djt FMNNPH1-2 / 0.746
3hjk FADVivid PAS protein VVD / 0.725
5dju FMNNPH1-2 / 0.723
2v1a FMNNPH1-1 / 0.721
3ue6 FMNAureochrome1 / 0.721
4eep FMNPhototropin-2 2.7.11.1 0.720
4kuk RBFPutative blue-light photoreceptor / 0.713
3p7n FMNLight-activated DNA-binding protein EL222 / 0.712
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.708
3d72 FADVivid PAS protein VVD / 0.699
2pdt FADVivid PAS protein VVD / 0.694
4eet FMNPhototropin-2 2.7.11.1 0.692
4ees FMNPhototropin-2 2.7.11.1 0.688
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.679
2pr5 FMNBlue-light photoreceptor / 0.676
4hj4 FMNLOV protein / 0.675
5ahk FADAcetolactate synthase II, large subunit / 0.675
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.674
2z6d FMNPhototropin-2 2.7.11.1 0.672
5ahs FADAcyl-CoA dehydrogenase / 0.672
1n9l FMNPutative blue light receptor / 0.670
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.665
4hhd FMNPhototropin-1 2.7.11.1 0.664
3lad FADDihydrolipoyl dehydrogenase / 0.663
2pd8 FADVivid PAS protein VVD / 0.661
2z6i FMN2-nitropropane dioxygenase / 0.661
4hia FMNLOV protein / 0.659
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.656
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.656
1a8p FADFerredoxin--NADP reductase / 0.655
2o12 FMNChorismate synthase / 0.655
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.654
4q4k FMNUncharacterized protein / 0.654
3gwd FADCyclohexanone monooxygenase / 0.653
2jk6 FADTrypanothione reductase / 0.652
3e2s FADBifunctional protein PutA 1.5.5.2 0.651