sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5dif | GNP | GTP-binding nuclear protein Ran |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.323 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 1.143 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 1.139 | |
| 3rs5 | GNP | GTPase HRas | / | 1.139 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 1.139 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 1.138 | |
| 3rs4 | GNP | GTPase HRas | / | 1.136 | |
| 4dlz | GNP | GTPase HRas | / | 1.134 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 1.128 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 1.125 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 1.123 | |
| 2rgc | GNP | GTPase HRas | / | 1.118 | |
| 4dlx | GNP | GTPase HRas | / | 1.107 | |
| 3rs7 | GNP | GTPase HRas | / | 1.101 | |
| 3rsl | GNP | GTPase HRas | / | 1.088 | |
| 2c5l | GTP | GTPase HRas | / | 1.087 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.072 | |
| 4dlv | GNP | GTPase HRas | / | 1.070 | |
| 4dlt | GNP | GTPase HRas | / | 1.069 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.068 | |
| 3rs0 | GNP | GTPase HRas | / | 1.065 | |
| 4dls | GNP | GTPase HRas | / | 1.065 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.064 | |
| 3l8y | GNP | GTPase HRas | / | 1.054 | |
| 3oiu | GNP | GTPase HRas | / | 1.054 | |
| 4l9w | GNP | GTPase HRas | / | 1.052 | |
| 3k8y | GNP | GTPase HRas | / | 1.050 | |
| 3lbi | GNP | GTPase HRas | / | 1.050 | |
| 3k9l | GNP | GTPase HRas | / | 1.049 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.049 | |
| 3oiw | GNP | GTPase HRas | / | 1.044 | |
| 4dlw | GNP | GTPase HRas | / | 1.038 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.036 | |
| 3v4f | GNP | GTPase HRas | / | 1.036 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.036 | |
| 5b2z | GNP | GTPase HRas | / | 1.035 | |
| 3lbn | GNP | GTPase HRas | / | 1.034 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.034 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.030 | |
| 4nyj | GNP | GTPase HRas | / | 1.026 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.013 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 1.012 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 1.012 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 1.011 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.010 | |
| 3oiv | GNP | GTPase HRas | / | 1.009 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 1.004 | |
| 3i3s | GNP | GTPase HRas | / | 1.002 | |
| 2rgb | GNP | GTPase HRas | / | 1.000 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.999 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.995 | |
| 2rge | GNP | GTPase HRas | / | 0.995 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.988 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.986 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.983 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.981 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.980 | |
| 3ddc | GNP | GTPase HRas | / | 0.978 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.975 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.974 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.973 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.973 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.970 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.967 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.967 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.966 | |
| 4nyi | GNP | GTPase HRas | / | 0.964 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.963 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.962 | |
| 4g0n | GNP | GTPase HRas | / | 0.962 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.961 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.959 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.958 | |
| 3tgp | GNP | GTPase HRas | / | 0.953 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.952 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.948 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.947 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.946 | |
| 4mit | GTP | Rho-related protein racC | / | 0.946 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.945 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.945 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.941 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.940 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.936 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.936 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.935 | |
| 3kud | GDP | GTPase HRas | / | 0.934 | |
| 2rgg | GNP | GTPase HRas | / | 0.930 | |
| 4dso | GSP | GTPase KRas | / | 0.929 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.927 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.924 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.922 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.920 | |
| 4dsn | GCP | GTPase KRas | / | 0.920 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.918 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.918 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.918 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.915 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.915 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.915 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.913 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.913 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.909 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.909 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.908 | |
| 4dsu | GDP | GTPase KRas | / | 0.907 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.904 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.903 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.903 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.902 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.902 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.900 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.899 | |
| 3ftq | GNP | Septin-2 | / | 0.896 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.896 | |
| 4k81 | GTP | GTPase HRas | / | 0.896 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.895 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.895 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.894 | |
| 4xvq | GNP | GTPase HRas | / | 0.894 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.893 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.891 | |
| 4l9s | GDP | GTPase HRas | / | 0.888 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.886 | |
| 2ce2 | GDP | GTPase HRas | / | 0.886 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.885 | |
| 3lbh | GNP | GTPase HRas | / | 0.885 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.884 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.883 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.881 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.880 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.879 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.876 | |
| 4dvg | GSP | Rho family GTPase | / | 0.875 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.874 | |
| 3ref | GDP | Rho family GTPase | / | 0.873 | |
| 3r9x | GNP | GTPase Era | / | 0.872 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.871 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.871 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.869 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.869 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.869 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.868 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.864 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.863 | |
| 4l8g | GDP | GTPase KRas | / | 0.861 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.860 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.858 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.857 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.857 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.854 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.854 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.853 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.853 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.853 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.852 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.851 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.851 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.850 | |
| 4wa7 | GDP | GTPase KRas | / | 0.849 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.848 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.848 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.848 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.848 | |
| 4tq9 | GDP | GTPase KRas | / | 0.847 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.844 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.843 | |
| 4epw | GDP | GTPase KRas | / | 0.843 | |
| 4lrw | GDP | GTPase KRas | / | 0.841 | |
| 4luc | GDP | GTPase KRas | / | 0.840 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.839 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.838 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.837 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.836 | |
| 4lv6 | GDP | GTPase KRas | / | 0.835 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.834 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.834 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.834 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.833 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.832 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.831 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.831 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.830 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.830 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.829 | |
| 4q02 | GDP | GTPase KRas | / | 0.828 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.827 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.826 | |
| 4q03 | GDP | GTPase KRas | / | 0.826 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.825 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.822 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.822 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.819 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.819 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.818 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.816 | |
| 4epx | GDP | GTPase KRas | / | 0.816 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.814 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.812 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.811 | |
| 2cl6 | CAG | GTPase HRas | / | 0.811 | |
| 4ql3 | GDP | GTPase KRas | / | 0.811 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.810 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.808 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.807 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.806 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.805 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.805 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.804 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.803 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.802 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.802 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.802 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.801 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.801 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.800 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.800 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.800 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.799 | |
| 4lpk | GDP | GTPase KRas | / | 0.798 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.797 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.796 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.796 | |
| 1lfd | GNP | GTPase HRas | / | 0.796 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.796 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.796 | |
| 3ieu | GDP | GTPase Era | / | 0.795 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.794 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.793 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.791 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.789 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.788 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.788 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.787 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.787 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.787 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.785 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.785 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.783 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.783 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.782 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.782 | |
| 4xvr | GNP | GTPase HRas | / | 0.782 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.781 | |
| 4obe | GDP | GTPase KRas | / | 0.781 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.780 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.780 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.780 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 4v02 | ATP | Site-determining protein | / | 0.780 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.777 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.776 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.776 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.772 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.772 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.771 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.771 | |
| 4ldj | GDP | GTPase KRas | / | 0.771 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.770 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.768 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.768 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.768 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.768 | |
| 4yqf | GDP | Septin-9 | / | 0.768 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.767 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.767 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.766 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.766 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.764 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.763 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.762 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.762 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.762 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.762 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.761 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.760 | |
| 1xmv | ADP | Protein RecA | / | 0.759 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.759 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.758 | |
| 4db1 | ANP | Myosin-7 | / | 0.758 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.758 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.756 | |
| 5cyo | GDP | Septin-9 | / | 0.755 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.754 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.754 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.754 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.754 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.752 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.752 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.751 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.751 | |
| 2fna | ADP | Uncharacterized protein | / | 0.751 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.751 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.750 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.750 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.749 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.748 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.748 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.747 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.741 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 2zts | ADP | Uncharacterized protein | / | 0.741 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.739 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.739 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.739 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.739 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.738 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.738 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.738 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.738 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.737 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.737 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.737 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.735 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.734 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.734 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.733 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.732 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.731 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.730 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.730 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.730 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.728 | |
| 1xms | ANP | Protein RecA | / | 0.728 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.728 | |
| 4xvu | ATP | ATPase GET3 | / | 0.728 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.727 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.726 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.726 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.726 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.726 | |
| 1ank | ANP | Adenylate kinase | / | 0.725 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.725 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.725 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.724 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.724 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.724 | |
| 1nly | AGS | Cag alpha | / | 0.723 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.723 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.722 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.721 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.721 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.720 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.720 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.720 | |
| 5bn3 | ADP | NEQ263 | / | 0.720 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.720 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.719 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.718 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.718 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.717 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.716 | |
| 4c30 | ANP | DNA helicase | / | 0.716 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.716 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.714 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.714 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.713 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.711 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.711 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.711 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.711 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.710 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.709 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.709 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.708 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.708 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.707 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.707 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.707 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.705 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.705 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.705 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.705 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.704 | |
| 4jlo | ADP | Adenylate kinase | / | 0.704 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.703 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.703 | |
| 4jld | ADP | Adenylate kinase | / | 0.702 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.702 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.701 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.701 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.700 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.699 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.698 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.698 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.695 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.695 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 4fid | GDP | G protein alpha subunit, putative | / | 0.694 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.693 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.692 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.692 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.692 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.692 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.691 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.690 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.688 | |
| 2zr9 | DTP | Protein RecA | / | 0.688 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.687 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.687 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.687 | |
| 1ake | AP5 | Adenylate kinase | / | 0.686 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.686 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.686 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.685 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.684 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.684 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.683 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.683 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.682 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.682 | |
| 5cyp | GSP | Septin-9 | / | 0.682 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.681 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.679 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.678 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.678 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.678 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.678 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.675 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.674 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.674 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.674 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.672 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.672 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.672 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.672 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.672 | |
| 4rz3 | ADP | Site-determining protein | / | 0.671 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.671 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.670 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.669 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.669 | |
| 2eck | ADP | Adenylate kinase | / | 0.669 | |
| 5ftf | ADP | TPR domain protein | / | 0.669 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.668 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.668 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.668 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.668 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.667 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.666 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.662 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.660 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 2q2y | ADP | Kinesin-like protein KIF11 | / | 0.657 | |
| 4ike | ADP | Adenylate kinase | / | 0.657 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.656 | |
| 2zsb | ADP | Pantothenate kinase | 2.7.1.33 | 0.656 | |
| 4kqs | RIS | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.654 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.653 | |
| 2zev | B71 | Geranylgeranyl pyrophosphate synthase | / | 0.653 | |
| 4iei | ADP | Gene 2 protein | / | 0.653 | |
| 4jky | ADP | Adenylate kinase | / | 0.653 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.650 |