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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5dbf NDP Iridoid synthase 1.3.1.99

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5dbf NDPIridoid synthase 1.3.1.99 1.321
5dcy NAPIridoid synthase 1.3.1.99 1.255
5dbg NADIridoid synthase 1.3.1.99 1.187
5emh NAPIridoid synthase 1.3.1.99 1.162
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.907
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.660