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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cts CMC Citrate synthase, mitochondrial 2.3.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5cts CMCCitrate synthase, mitochondrial 2.3.3.1 1.199
1csc CMCCitrate synthase, mitochondrial 2.3.3.1 1.154
3csc ACOCitrate synthase, mitochondrial 2.3.3.1 1.015
6cts CICCitrate synthase, mitochondrial 2.3.3.1 1.006
2cts COACitrate synthase, mitochondrial 2.3.3.1 0.760
2r26 CMCCitrate synthase 2.3.3.16 0.760
2r9e SDXCitrate synthase 2.3.3.16 0.749
1ixe COACitrate synthase / 0.746
1a59 COA2-methylcitrate synthase / 0.695
2h12 CMXCitrate synthase / 0.689
1aj8 COACitrate synthase / 0.672