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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ch7 MGD DMSO reductase family type II enzyme, molybdopterin subunit

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5ch7 MGDDMSO reductase family type II enzyme, molybdopterin subunit / 1.327
4ydd MGDDMSO reductase family type II enzyme, molybdopterin subunit / 1.224
5e7o MGDDMSO reductase family type II enzyme, molybdopterin subunit / 0.883
2ivf MGDAlpha-subunit of ethylbenzene dehydrogenase / 0.786
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 0.658