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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cb4 ACP Tubulin tyrosine ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5cb4 ACPTubulin tyrosine ligase / 0.972
5ca0 ACPTubulin tyrosine ligase / 0.838
4ffl ADPUncharacterized protein / 0.684
4zol ACPTubulin tyrosine ligase / 0.677
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.670
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.668
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.666
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.664
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.656
3wnz ADPAlanine--anticapsin ligase / 0.654
4zhq ACPTubulin tyrosine ligase / 0.654
4dh3 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653