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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cb3 APR O-acetyl-ADP-ribose deacetylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5cb3 APRO-acetyl-ADP-ribose deacetylase / 1.253
2bfq AR6[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 1.004
5fsy AR6Uncharacterized protein / 0.917
5cb5 APRO-acetyl-ADP-ribose deacetylase / 0.910
3gqo APRNon-structural polyprotein / 0.839
2bfr ADP[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.828
3sig AR6Uncharacterized protein / 0.807
3v2b AR6Poly [ADP-ribose] polymerase 15 2.4.2.30 0.793
3ewr APRReplicase polyprotein 1a 3.4.22 0.792
3iif APRCore histone macro-H2A.1 / 0.789
3iid APRCore histone macro-H2A.1 / 0.755
4b1h AR6Poly(ADP-ribose) glycohydrolase 3.2.1.143 0.745
5cms APRO-acetyl-ADP-ribose deacetylase / 0.727
4abk AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.723
4j5r A1RO-acetyl-ADP-ribose deacetylase 1 3.5.1 0.716
1txz APRProbable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84 0.703
4na4 A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.698
3q71 AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.691
4b1i A8PPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.686
4d86 ADPPoly [ADP-ribose] polymerase 14 2.4.2.30 0.661
2fav APRNonstructural polyprotein pp1a / 0.660
3sii A1RUncharacterized protein / 0.651