sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5c88 | COA | N-alpha-acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 5c88 | COA | N-alpha-acetyltransferase | / | 1.128 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.805 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.788 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.778 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.745 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.733 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.728 | |
| 4kub | COA | Uncharacterized protein | / | 0.728 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.716 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.716 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.710 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.708 | |
| 1qsr | ACO | HAT A1 | / | 0.701 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.697 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.695 | |
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.695 | |
| 1pu9 | COA | HAT A1 | / | 0.694 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.693 | |
| 4cry | ACO | PanD regulatory factor | / | 0.691 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.686 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.682 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.678 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.677 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.675 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.674 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.671 | |
| 3d2p | COA | Amino-acid acetyltransferase | / | 0.665 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.665 | |
| 4b5p | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.664 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.662 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.660 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.660 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.659 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.658 | |
| 3sxn | COA | N-acetyltransferase Eis | / | 0.658 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.658 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.654 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.653 | |
| 2zw4 | COA | Bleomycin acetyltransferase | / | 0.652 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.652 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.651 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.650 |