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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5c7t APR ADP-ribose pyrophosphatase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5c7t APRADP-ribose pyrophosphatase / 0.984
1khz ADVADP-ribose pyrophosphatase 3.6.1.13 0.764
1mqe APRMutT/nudix family protein / 0.667
1ikg REXD-alanyl-D-alanine carboxypeptidase 3.4.16.4 0.657
3bm4 ADVADP-sugar pyrophosphatase 3.6.1.13 0.656
2ji6 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.655