Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5c4f UPG Histo-blood group ABO system transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5c4f UPGHisto-blood group ABO system transferase / 1.186
5c4c UPGHisto-blood group ABO system transferase / 1.167
5c4b UPGHisto-blood group ABO system transferase / 1.047
5c1g GDUHisto-blood group ABO system transferase / 0.963
3v0m 5GWHisto-blood group ABO system transferase / 0.940
5c8r UPGHisto-blood group ABO system transferase / 0.935
3zgf IUGHisto-blood group ABO system transferase / 0.934
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.933
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.931
5c3a URMHisto-blood group ABO system transferase / 0.917
5c48 URMHisto-blood group ABO system transferase / 0.901
3v0n 4GWHisto-blood group ABO system transferase / 0.893
5c47 URMHisto-blood group ABO system transferase / 0.871
3v0p 4GWHisto-blood group ABO system transferase / 0.868
5c3b URMHisto-blood group ABO system transferase / 0.868
3v0o 4GWHisto-blood group ABO system transferase / 0.863
4kc1 WS1Histo-blood group ABO system transferase / 0.854
4kc2 WS2Histo-blood group ABO system transferase / 0.853
5c1h GDUHisto-blood group ABO system transferase / 0.852
4kc4 WS3Histo-blood group ABO system transferase / 0.847
5c1l GDUHisto-blood group ABO system transferase / 0.845
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.830
1zdf UPGGlycogenin-1 2.4.1.186 0.791
3t7o UPGGlycogenin-1 2.4.1.186 0.757
3rmw UPGGlycogenin-1 2.4.1.186 0.748
1zdg UPGGlycogenin-1 2.4.1.186 0.711
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.706
1ss9 UPFLgtC / 0.686
3hdy GDUUDP-galactopyranose mutase / 0.663
3srz UPGToxin A / 0.659
4nv1 0FXFormyl transferase / 0.657
4pd6 URINucleoside permease / 0.654
1yro GDUBeta-1,4-galactosyltransferase 1 / 0.653